Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18085 and ABZR87_RS18090 overlap by 4 nucleotides ABZR87_RS18090 and ABZR87_RS18095 overlap by 19 nucleotides ABZR87_RS18095 and ABZR87_RS18100 are separated by 8 nucleotides
ABZR87_RS18085: ABZR87_RS18085 - type III secretion system ATPase SctN, at 422,209 to 423,633
_RS18085
ABZR87_RS18090: ABZR87_RS18090 - type III secretion system stator protein SctL, at 423,630 to 424,244
_RS18090
ABZR87_RS18095: ABZR87_RS18095 - hypothetical protein, at 424,226 to 424,900
_RS18095
ABZR87_RS18100: ABZR87_RS18100 - type III secretion system inner membrane ring lipoprotein SctJ, at 424,909 to 425,730
_RS18100
Position (kb) 423
424
425 Strain fitness (log2 ratio) -2
-1
0
1 at 422.636 kb on + strand, within ABZR87_RS18085 at 422.637 kb on - strand, within ABZR87_RS18085 at 422.637 kb on - strand, within ABZR87_RS18085 at 422.831 kb on + strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 423.180 kb on - strand, within ABZR87_RS18085 at 423.378 kb on - strand, within ABZR87_RS18085 at 423.562 kb on + strand at 423.563 kb on - strand at 423.563 kb on - strand at 423.571 kb on + strand at 423.572 kb on - strand at 423.572 kb on - strand at 423.850 kb on + strand, within ABZR87_RS18090 at 424.012 kb on + strand, within ABZR87_RS18090 at 424.012 kb on + strand, within ABZR87_RS18090 at 424.013 kb on - strand, within ABZR87_RS18090 at 424.013 kb on - strand, within ABZR87_RS18090 at 424.013 kb on - strand, within ABZR87_RS18090 at 424.085 kb on - strand, within ABZR87_RS18090 at 424.168 kb on + strand, within ABZR87_RS18090 at 424.464 kb on + strand, within ABZR87_RS18095 at 424.631 kb on + strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095 at 425.026 kb on + strand, within ABZR87_RS18100 at 425.026 kb on + strand, within ABZR87_RS18100 at 425.090 kb on + strand, within ABZR87_RS18100 at 425.169 kb on - strand, within ABZR87_RS18100
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 422,636 + ABZR87_RS18085 0.30 -0.6 422,637 - ABZR87_RS18085 0.30 -0.1 422,637 - ABZR87_RS18085 0.30 -0.6 422,831 + ABZR87_RS18085 0.44 -0.3 422,832 - ABZR87_RS18085 0.44 +0.5 422,832 - ABZR87_RS18085 0.44 -0.9 422,832 - ABZR87_RS18085 0.44 -0.1 423,180 - ABZR87_RS18085 0.68 -0.1 423,378 - ABZR87_RS18085 0.82 -0.3 423,562 + -0.9 423,563 - -0.8 423,563 - -0.6 423,571 + -0.2 423,572 - -0.4 423,572 - +0.5 423,850 + ABZR87_RS18090 0.36 -0.1 424,012 + ABZR87_RS18090 0.62 +1.2 424,012 + ABZR87_RS18090 0.62 -1.7 424,013 - ABZR87_RS18090 0.62 +0.0 424,013 - ABZR87_RS18090 0.62 +0.1 424,013 - ABZR87_RS18090 0.62 +0.8 424,085 - ABZR87_RS18090 0.74 -0.4 424,168 + ABZR87_RS18090 0.87 -0.2 424,464 + ABZR87_RS18095 0.35 -0.5 424,631 + ABZR87_RS18095 0.60 -0.3 424,632 - ABZR87_RS18095 0.60 +0.1 424,632 - ABZR87_RS18095 0.60 +0.1 424,632 - ABZR87_RS18095 0.60 -1.2 424,632 - ABZR87_RS18095 0.60 -2.2 425,026 + ABZR87_RS18100 0.14 +1.4 425,026 + ABZR87_RS18100 0.14 +0.2 425,090 + ABZR87_RS18100 0.22 +0.3 425,169 - ABZR87_RS18100 0.32 -0.8
Or see this region's nucleotide sequence