Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18025 and ABZR87_RS18030 overlap by 4 nucleotides ABZR87_RS18030 and ABZR87_RS18035 are separated by 14 nucleotides ABZR87_RS18035 and ABZR87_RS18040 are separated by 8 nucleotides
ABZR87_RS18025: ABZR87_RS18025 - flagellar biosynthesis protein FlhA, at 399,717 to 401,852
_RS18025
ABZR87_RS18030: ABZR87_RS18030 - flagellar biosynthesis protein FlhF, at 401,849 to 403,756
_RS18030
ABZR87_RS18035: ABZR87_RS18035 - flagellar synthesis regulator FleN, at 403,771 to 404,553
_RS18035
ABZR87_RS18040: ABZR87_RS18040 - RNA polymerase sigma factor FliA, at 404,562 to 405,323
_RS18040
Position (kb) 401
402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 401.199 kb on + strand, within ABZR87_RS18025 at 401.199 kb on + strand, within ABZR87_RS18025 at 401.199 kb on + strand, within ABZR87_RS18025 at 401.200 kb on - strand, within ABZR87_RS18025 at 401.200 kb on - strand, within ABZR87_RS18025 at 401.200 kb on - strand, within ABZR87_RS18025 at 401.253 kb on + strand, within ABZR87_RS18025 at 401.253 kb on + strand, within ABZR87_RS18025 at 401.254 kb on - strand, within ABZR87_RS18025 at 401.254 kb on - strand, within ABZR87_RS18025 at 401.261 kb on + strand, within ABZR87_RS18025 at 401.261 kb on + strand, within ABZR87_RS18025 at 401.261 kb on + strand, within ABZR87_RS18025 at 401.262 kb on - strand, within ABZR87_RS18025 at 401.262 kb on - strand, within ABZR87_RS18025 at 401.262 kb on - strand, within ABZR87_RS18025 at 401.414 kb on + strand, within ABZR87_RS18025 at 401.415 kb on - strand, within ABZR87_RS18025 at 401.615 kb on + strand, within ABZR87_RS18025 at 401.719 kb on + strand at 401.819 kb on + strand at 401.819 kb on + strand at 401.819 kb on + strand at 401.866 kb on + strand at 401.867 kb on - strand at 402.440 kb on - strand, within ABZR87_RS18030 at 402.884 kb on - strand, within ABZR87_RS18030 at 402.938 kb on + strand, within ABZR87_RS18030 at 402.971 kb on + strand, within ABZR87_RS18030 at 402.971 kb on + strand, within ABZR87_RS18030 at 402.971 kb on + strand, within ABZR87_RS18030 at 402.972 kb on - strand, within ABZR87_RS18030 at 403.211 kb on + strand, within ABZR87_RS18030 at 403.211 kb on + strand, within ABZR87_RS18030 at 403.556 kb on + strand, within ABZR87_RS18030 at 403.556 kb on + strand, within ABZR87_RS18030 at 403.556 kb on + strand, within ABZR87_RS18030 at 403.556 kb on + strand, within ABZR87_RS18030 at 403.557 kb on - strand, within ABZR87_RS18030 at 403.565 kb on + strand, within ABZR87_RS18030 at 403.566 kb on - strand at 403.705 kb on - strand at 403.923 kb on + strand, within ABZR87_RS18035 at 404.233 kb on + strand, within ABZR87_RS18035 at 404.285 kb on + strand, within ABZR87_RS18035 at 404.286 kb on - strand, within ABZR87_RS18035 at 404.548 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.596 kb on + strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.640 kb on + strand, within ABZR87_RS18040 at 404.640 kb on + strand, within ABZR87_RS18040 at 404.640 kb on + strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 401,199 + ABZR87_RS18025 0.69 +1.6 401,199 + ABZR87_RS18025 0.69 +1.9 401,199 + ABZR87_RS18025 0.69 +2.6 401,200 - ABZR87_RS18025 0.69 +2.4 401,200 - ABZR87_RS18025 0.69 +1.4 401,200 - ABZR87_RS18025 0.69 +2.4 401,253 + ABZR87_RS18025 0.72 +3.2 401,253 + ABZR87_RS18025 0.72 +2.9 401,254 - ABZR87_RS18025 0.72 +2.0 401,254 - ABZR87_RS18025 0.72 +2.5 401,261 + ABZR87_RS18025 0.72 +2.4 401,261 + ABZR87_RS18025 0.72 +1.3 401,261 + ABZR87_RS18025 0.72 +2.1 401,262 - ABZR87_RS18025 0.72 +2.3 401,262 - ABZR87_RS18025 0.72 +2.4 401,262 - ABZR87_RS18025 0.72 +3.0 401,414 + ABZR87_RS18025 0.79 +1.8 401,415 - ABZR87_RS18025 0.79 +2.5 401,615 + ABZR87_RS18025 0.89 +2.3 401,719 + +2.0 401,819 + +3.0 401,819 + +1.4 401,819 + +1.7 401,866 + +2.4 401,867 - +1.9 402,440 - ABZR87_RS18030 0.31 +1.6 402,884 - ABZR87_RS18030 0.54 +1.9 402,938 + ABZR87_RS18030 0.57 +1.8 402,971 + ABZR87_RS18030 0.59 +1.8 402,971 + ABZR87_RS18030 0.59 +2.1 402,971 + ABZR87_RS18030 0.59 +1.4 402,972 - ABZR87_RS18030 0.59 +2.1 403,211 + ABZR87_RS18030 0.71 +1.8 403,211 + ABZR87_RS18030 0.71 +2.3 403,556 + ABZR87_RS18030 0.89 +1.7 403,556 + ABZR87_RS18030 0.89 +2.1 403,556 + ABZR87_RS18030 0.89 +1.5 403,556 + ABZR87_RS18030 0.89 +1.6 403,557 - ABZR87_RS18030 0.90 +1.7 403,565 + ABZR87_RS18030 0.90 +1.9 403,566 - +2.2 403,705 - +2.2 403,923 + ABZR87_RS18035 0.19 -0.4 404,233 + ABZR87_RS18035 0.59 -1.8 404,285 + ABZR87_RS18035 0.66 -1.0 404,286 - ABZR87_RS18035 0.66 +0.7 404,548 + +0.1 404,591 + +1.4 404,591 + +2.3 404,591 + +0.5 404,591 + +3.4 404,591 + +1.4 404,591 + -2.1 404,592 - +2.2 404,592 - +2.0 404,592 - +2.3 404,592 - +1.1 404,592 - +1.7 404,592 - +1.7 404,592 - +1.1 404,592 - +1.0 404,592 - +0.8 404,592 - +1.0 404,592 - +1.1 404,592 - +2.2 404,595 + +2.5 404,595 + +1.4 404,595 + +2.1 404,595 + +1.9 404,595 + +2.0 404,595 + +1.6 404,595 + +1.3 404,596 + +0.9 404,596 - +0.7 404,596 - +2.7 404,596 - +1.6 404,596 - +1.2 404,596 - +0.6 404,596 - +1.5 404,596 - +1.4 404,596 - +0.9 404,596 - +1.2 404,596 - +1.6 404,596 - +1.1 404,640 + ABZR87_RS18040 0.10 +1.1 404,640 + ABZR87_RS18040 0.10 +1.4 404,640 + ABZR87_RS18040 0.10 +1.6 404,641 - ABZR87_RS18040 0.10 +1.7 404,641 - ABZR87_RS18040 0.10 +1.6 404,641 - ABZR87_RS18040 0.10 +1.4 404,641 - ABZR87_RS18040 0.10 +1.3 404,641 - ABZR87_RS18040 0.10 +1.6
Or see this region's nucleotide sequence