Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17945 and ABZR87_RS17950 are separated by 79 nucleotides ABZR87_RS17950 and ABZR87_RS17955 are separated by 25 nucleotides ABZR87_RS17955 and ABZR87_RS17960 are separated by 18 nucleotides
ABZR87_RS17945: ABZR87_RS17945 - flagellar motor stator protein MotA, at 380,482 to 381,342
_RS17945
ABZR87_RS17950: ABZR87_RS17950 - flagellar motor protein MotB, at 381,422 to 382,369
_RS17950
ABZR87_RS17955: ABZR87_RS17955 - response regulator, at 382,395 to 382,808
_RS17955
ABZR87_RS17960: ABZR87_RS17960 - chemotaxis protein CheA, at 382,827 to 385,001
_RS17960
Position (kb) 381
382
383 Strain fitness (log2 ratio) -1
0
1
2
3 at 380.433 kb on + strand at 380.445 kb on + strand at 380.445 kb on + strand at 380.445 kb on + strand at 380.446 kb on - strand at 380.446 kb on - strand at 380.446 kb on - strand at 380.486 kb on + strand at 380.486 kb on + strand at 380.487 kb on - strand at 380.500 kb on + strand at 380.501 kb on - strand at 380.533 kb on + strand at 380.533 kb on + strand at 380.533 kb on + strand at 380.533 kb on + strand at 380.533 kb on + strand at 380.533 kb on + strand at 380.534 kb on - strand at 380.534 kb on - strand at 380.704 kb on + strand, within ABZR87_RS17945 at 380.704 kb on + strand, within ABZR87_RS17945 at 380.704 kb on + strand, within ABZR87_RS17945 at 380.704 kb on + strand, within ABZR87_RS17945 at 380.704 kb on + strand, within ABZR87_RS17945 at 380.704 kb on + strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.706 kb on + strand, within ABZR87_RS17945 at 380.706 kb on + strand, within ABZR87_RS17945 at 380.707 kb on - strand, within ABZR87_RS17945 at 380.707 kb on - strand, within ABZR87_RS17945 at 380.707 kb on - strand, within ABZR87_RS17945 at 380.707 kb on - strand, within ABZR87_RS17945 at 380.728 kb on + strand, within ABZR87_RS17945 at 380.728 kb on + strand, within ABZR87_RS17945 at 380.728 kb on + strand, within ABZR87_RS17945 at 380.728 kb on + strand, within ABZR87_RS17945 at 380.728 kb on + strand, within ABZR87_RS17945 at 380.729 kb on - strand, within ABZR87_RS17945 at 380.729 kb on - strand, within ABZR87_RS17945 at 380.818 kb on + strand, within ABZR87_RS17945 at 380.818 kb on + strand, within ABZR87_RS17945 at 380.818 kb on + strand, within ABZR87_RS17945 at 380.818 kb on + strand, within ABZR87_RS17945 at 380.819 kb on - strand, within ABZR87_RS17945 at 380.819 kb on - strand, within ABZR87_RS17945 at 380.867 kb on - strand, within ABZR87_RS17945 at 381.105 kb on + strand, within ABZR87_RS17945 at 381.235 kb on + strand, within ABZR87_RS17945 at 381.355 kb on + strand at 381.355 kb on + strand at 381.356 kb on - strand at 381.356 kb on - strand at 381.390 kb on - strand at 381.513 kb on - strand at 381.605 kb on + strand, within ABZR87_RS17950 at 381.606 kb on - strand, within ABZR87_RS17950 at 381.606 kb on - strand, within ABZR87_RS17950 at 381.606 kb on - strand, within ABZR87_RS17950 at 381.947 kb on + strand, within ABZR87_RS17950 at 381.947 kb on + strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.949 kb on + strand, within ABZR87_RS17950 at 382.037 kb on + strand, within ABZR87_RS17950 at 382.190 kb on + strand, within ABZR87_RS17950 at 382.190 kb on + strand, within ABZR87_RS17950 at 382.190 kb on + strand, within ABZR87_RS17950 at 382.190 kb on + strand, within ABZR87_RS17950 at 382.190 kb on + strand, within ABZR87_RS17950 at 382.191 kb on - strand, within ABZR87_RS17950 at 382.191 kb on - strand, within ABZR87_RS17950 at 382.191 kb on - strand, within ABZR87_RS17950 at 382.367 kb on + strand at 382.826 kb on + strand at 382.826 kb on + strand at 382.826 kb on + strand at 382.826 kb on + strand at 382.826 kb on + strand at 382.826 kb on + strand at 382.826 kb on + strand at 382.827 kb on - strand at 383.140 kb on - strand, within ABZR87_RS17960 at 383.157 kb on - strand, within ABZR87_RS17960 at 383.178 kb on + strand, within ABZR87_RS17960 at 383.178 kb on + strand, within ABZR87_RS17960 at 383.178 kb on + strand, within ABZR87_RS17960 at 383.178 kb on + strand, within ABZR87_RS17960 at 383.179 kb on - strand, within ABZR87_RS17960 at 383.179 kb on - strand, within ABZR87_RS17960 at 383.179 kb on - strand, within ABZR87_RS17960
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 380,433 + +0.6 380,445 + +1.0 380,445 + +0.1 380,445 + +0.9 380,446 - +2.3 380,446 - +2.6 380,446 - +2.4 380,486 + +2.5 380,486 + +0.5 380,487 - +2.1 380,500 + +2.0 380,501 - +1.8 380,533 + +2.8 380,533 + +2.1 380,533 + +1.2 380,533 + +2.8 380,533 + +2.6 380,533 + +1.7 380,534 - +2.0 380,534 - +3.3 380,704 + ABZR87_RS17945 0.26 +2.2 380,704 + ABZR87_RS17945 0.26 +2.4 380,704 + ABZR87_RS17945 0.26 +1.1 380,704 + ABZR87_RS17945 0.26 +2.4 380,704 + ABZR87_RS17945 0.26 +2.3 380,704 + ABZR87_RS17945 0.26 +1.8 380,705 - ABZR87_RS17945 0.26 +2.1 380,705 - ABZR87_RS17945 0.26 +2.9 380,705 - ABZR87_RS17945 0.26 +1.0 380,705 - ABZR87_RS17945 0.26 +1.9 380,705 - ABZR87_RS17945 0.26 +1.7 380,705 - ABZR87_RS17945 0.26 +1.2 380,705 - ABZR87_RS17945 0.26 +3.4 380,706 + ABZR87_RS17945 0.26 +2.3 380,706 + ABZR87_RS17945 0.26 +1.5 380,707 - ABZR87_RS17945 0.26 +2.2 380,707 - ABZR87_RS17945 0.26 +1.2 380,707 - ABZR87_RS17945 0.26 +2.5 380,707 - ABZR87_RS17945 0.26 +2.0 380,728 + ABZR87_RS17945 0.29 +2.0 380,728 + ABZR87_RS17945 0.29 +1.8 380,728 + ABZR87_RS17945 0.29 +1.4 380,728 + ABZR87_RS17945 0.29 +1.4 380,728 + ABZR87_RS17945 0.29 +2.3 380,729 - ABZR87_RS17945 0.29 +1.9 380,729 - ABZR87_RS17945 0.29 +2.1 380,818 + ABZR87_RS17945 0.39 +2.3 380,818 + ABZR87_RS17945 0.39 +1.6 380,818 + ABZR87_RS17945 0.39 +2.0 380,818 + ABZR87_RS17945 0.39 +1.3 380,819 - ABZR87_RS17945 0.39 +0.8 380,819 - ABZR87_RS17945 0.39 +2.5 380,867 - ABZR87_RS17945 0.45 +2.8 381,105 + ABZR87_RS17945 0.72 +0.8 381,235 + ABZR87_RS17945 0.87 +1.7 381,355 + +0.5 381,355 + +0.5 381,356 - +1.1 381,356 - +2.4 381,390 - +2.5 381,513 - +2.9 381,605 + ABZR87_RS17950 0.19 +3.3 381,606 - ABZR87_RS17950 0.19 +1.3 381,606 - ABZR87_RS17950 0.19 +1.9 381,606 - ABZR87_RS17950 0.19 +2.3 381,947 + ABZR87_RS17950 0.55 +2.7 381,947 + ABZR87_RS17950 0.55 +1.7 381,948 - ABZR87_RS17950 0.55 +0.7 381,948 - ABZR87_RS17950 0.55 +1.4 381,948 - ABZR87_RS17950 0.55 -0.3 381,948 - ABZR87_RS17950 0.55 +1.3 381,948 - ABZR87_RS17950 0.55 +1.7 381,948 - ABZR87_RS17950 0.55 +0.8 381,949 + ABZR87_RS17950 0.56 +2.6 382,037 + ABZR87_RS17950 0.65 +3.2 382,190 + ABZR87_RS17950 0.81 +2.9 382,190 + ABZR87_RS17950 0.81 +3.1 382,190 + ABZR87_RS17950 0.81 +2.4 382,190 + ABZR87_RS17950 0.81 +2.4 382,190 + ABZR87_RS17950 0.81 +1.5 382,191 - ABZR87_RS17950 0.81 +1.8 382,191 - ABZR87_RS17950 0.81 +1.8 382,191 - ABZR87_RS17950 0.81 +0.6 382,367 + +0.7 382,826 + -0.9 382,826 + -0.1 382,826 + +0.7 382,826 + +0.9 382,826 + +1.7 382,826 + +0.4 382,826 + +1.0 382,827 - +0.3 383,140 - ABZR87_RS17960 0.14 +1.3 383,157 - ABZR87_RS17960 0.15 +1.5 383,178 + ABZR87_RS17960 0.16 +0.9 383,178 + ABZR87_RS17960 0.16 -0.3 383,178 + ABZR87_RS17960 0.16 -0.4 383,178 + ABZR87_RS17960 0.16 +1.4 383,179 - ABZR87_RS17960 0.16 -0.4 383,179 - ABZR87_RS17960 0.16 -0.4 383,179 - ABZR87_RS17960 0.16 +1.5
Or see this region's nucleotide sequence