Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17905 and ABZR87_RS17910 overlap by 4 nucleotides ABZR87_RS17910 and ABZR87_RS17915 are separated by 71 nucleotides ABZR87_RS17915 and ABZR87_RS17920 are separated by 2 nucleotides ABZR87_RS17920 and ABZR87_RS17925 overlap by 4 nucleotides
ABZR87_RS17905: ABZR87_RS17905 - ABC transporter substrate-binding protein, at 373,287 to 374,291
_RS17905
ABZR87_RS17910: ABZR87_RS17910 - IclR family transcriptional regulator, at 374,288 to 375,106
_RS17910
ABZR87_RS17915: ABZR87_RS17915 - CoA transferase, at 375,178 to 376,365
_RS17915
ABZR87_RS17920: ABZR87_RS17920 - citryl-CoA lyase, at 376,368 to 377,222
_RS17920
ABZR87_RS17925: ABZR87_RS17925 - SMP-30/gluconolactonase/LRE family protein, at 377,219 to 378,115
_RS17925
Position (kb) 375
376
377 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 374.247 kb on + strand at 374.247 kb on + strand at 374.247 kb on + strand at 374.253 kb on - strand at 374.607 kb on - strand, within ABZR87_RS17910 at 374.607 kb on - strand, within ABZR87_RS17910 at 374.690 kb on + strand, within ABZR87_RS17910 at 374.690 kb on + strand, within ABZR87_RS17910 at 374.690 kb on + strand, within ABZR87_RS17910 at 374.690 kb on + strand, within ABZR87_RS17910 at 374.690 kb on + strand, within ABZR87_RS17910 at 374.691 kb on - strand, within ABZR87_RS17910 at 374.691 kb on - strand, within ABZR87_RS17910 at 374.691 kb on - strand, within ABZR87_RS17910 at 374.691 kb on - strand, within ABZR87_RS17910 at 374.691 kb on - strand, within ABZR87_RS17910 at 374.691 kb on - strand, within ABZR87_RS17910 at 374.691 kb on - strand, within ABZR87_RS17910 at 374.692 kb on + strand, within ABZR87_RS17910 at 374.693 kb on - strand, within ABZR87_RS17910 at 374.693 kb on - strand, within ABZR87_RS17910 at 374.843 kb on + strand, within ABZR87_RS17910 at 374.843 kb on + strand, within ABZR87_RS17910 at 374.843 kb on + strand, within ABZR87_RS17910 at 374.843 kb on + strand, within ABZR87_RS17910 at 374.843 kb on + strand, within ABZR87_RS17910 at 374.844 kb on - strand, within ABZR87_RS17910 at 374.844 kb on - strand, within ABZR87_RS17910 at 374.844 kb on - strand, within ABZR87_RS17910 at 374.844 kb on - strand, within ABZR87_RS17910 at 374.867 kb on + strand, within ABZR87_RS17910 at 374.870 kb on + strand, within ABZR87_RS17910 at 374.870 kb on + strand, within ABZR87_RS17910 at 374.870 kb on + strand, within ABZR87_RS17910 at 374.871 kb on - strand, within ABZR87_RS17910 at 374.871 kb on - strand, within ABZR87_RS17910 at 374.871 kb on - strand, within ABZR87_RS17910 at 374.871 kb on - strand, within ABZR87_RS17910 at 374.871 kb on - strand, within ABZR87_RS17910 at 375.104 kb on + strand at 375.105 kb on - strand at 375.105 kb on - strand at 375.161 kb on + strand at 375.161 kb on + strand at 375.247 kb on + strand at 375.248 kb on - strand at 375.248 kb on - strand at 375.475 kb on + strand, within ABZR87_RS17915 at 375.476 kb on - strand, within ABZR87_RS17915 at 375.476 kb on - strand, within ABZR87_RS17915 at 375.512 kb on - strand, within ABZR87_RS17915 at 375.512 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.753 kb on + strand, within ABZR87_RS17915 at 375.754 kb on - strand, within ABZR87_RS17915 at 375.754 kb on - strand, within ABZR87_RS17915 at 375.829 kb on + strand, within ABZR87_RS17915 at 375.829 kb on + strand, within ABZR87_RS17915 at 375.830 kb on - strand, within ABZR87_RS17915 at 376.290 kb on + strand at 376.426 kb on - strand at 376.459 kb on + strand, within ABZR87_RS17920 at 376.460 kb on - strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.825 kb on - strand, within ABZR87_RS17920 at 376.825 kb on - strand, within ABZR87_RS17920 at 376.929 kb on + strand, within ABZR87_RS17920 at 376.929 kb on + strand, within ABZR87_RS17920 at 376.929 kb on + strand, within ABZR87_RS17920 at 377.022 kb on + strand, within ABZR87_RS17920 at 377.022 kb on + strand, within ABZR87_RS17920 at 377.023 kb on - strand, within ABZR87_RS17920 at 377.160 kb on + strand at 377.167 kb on - strand at 377.167 kb on - strand at 377.169 kb on - strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.226 kb on - strand at 377.226 kb on - strand at 377.226 kb on - strand at 377.226 kb on - strand at 377.226 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 374,247 + -0.3 374,247 + +0.1 374,247 + -0.1 374,253 - +0.1 374,607 - ABZR87_RS17910 0.39 -2.0 374,607 - ABZR87_RS17910 0.39 -3.6 374,690 + ABZR87_RS17910 0.49 -3.5 374,690 + ABZR87_RS17910 0.49 -0.5 374,690 + ABZR87_RS17910 0.49 -0.9 374,690 + ABZR87_RS17910 0.49 -1.9 374,690 + ABZR87_RS17910 0.49 -1.9 374,691 - ABZR87_RS17910 0.49 -1.1 374,691 - ABZR87_RS17910 0.49 -2.2 374,691 - ABZR87_RS17910 0.49 -1.3 374,691 - ABZR87_RS17910 0.49 -3.2 374,691 - ABZR87_RS17910 0.49 -3.5 374,691 - ABZR87_RS17910 0.49 -1.5 374,691 - ABZR87_RS17910 0.49 -2.1 374,692 + ABZR87_RS17910 0.49 -1.2 374,693 - ABZR87_RS17910 0.49 -0.6 374,693 - ABZR87_RS17910 0.49 -0.0 374,843 + ABZR87_RS17910 0.68 -0.0 374,843 + ABZR87_RS17910 0.68 -0.0 374,843 + ABZR87_RS17910 0.68 +1.2 374,843 + ABZR87_RS17910 0.68 +0.2 374,843 + ABZR87_RS17910 0.68 -0.5 374,844 - ABZR87_RS17910 0.68 -2.0 374,844 - ABZR87_RS17910 0.68 -2.2 374,844 - ABZR87_RS17910 0.68 -0.5 374,844 - ABZR87_RS17910 0.68 -4.4 374,867 + ABZR87_RS17910 0.71 -2.8 374,870 + ABZR87_RS17910 0.71 -0.7 374,870 + ABZR87_RS17910 0.71 -0.2 374,870 + ABZR87_RS17910 0.71 -1.3 374,871 - ABZR87_RS17910 0.71 -2.3 374,871 - ABZR87_RS17910 0.71 -0.7 374,871 - ABZR87_RS17910 0.71 -3.4 374,871 - ABZR87_RS17910 0.71 -1.5 374,871 - ABZR87_RS17910 0.71 -2.5 375,104 + +0.6 375,105 - -0.0 375,105 - +0.5 375,161 + +0.6 375,161 + +0.7 375,247 + -1.6 375,248 - -0.5 375,248 - +0.2 375,475 + ABZR87_RS17915 0.25 -1.4 375,476 - ABZR87_RS17915 0.25 +0.4 375,476 - ABZR87_RS17915 0.25 +1.2 375,512 - ABZR87_RS17915 0.28 +0.1 375,512 - ABZR87_RS17915 0.28 +0.0 375,602 - ABZR87_RS17915 0.36 -0.1 375,602 - ABZR87_RS17915 0.36 -0.3 375,602 - ABZR87_RS17915 0.36 -0.2 375,602 - ABZR87_RS17915 0.36 +0.1 375,753 + ABZR87_RS17915 0.48 -0.5 375,754 - ABZR87_RS17915 0.48 -1.3 375,754 - ABZR87_RS17915 0.48 -0.6 375,829 + ABZR87_RS17915 0.55 +0.5 375,829 + ABZR87_RS17915 0.55 -2.2 375,830 - ABZR87_RS17915 0.55 -0.5 376,290 + -0.1 376,426 - -1.9 376,459 + ABZR87_RS17920 0.11 -0.4 376,460 - ABZR87_RS17920 0.11 +1.0 376,824 + ABZR87_RS17920 0.53 +0.4 376,824 + ABZR87_RS17920 0.53 -0.6 376,824 + ABZR87_RS17920 0.53 +0.2 376,824 + ABZR87_RS17920 0.53 -0.2 376,825 - ABZR87_RS17920 0.53 -0.1 376,825 - ABZR87_RS17920 0.53 -0.4 376,929 + ABZR87_RS17920 0.66 +0.1 376,929 + ABZR87_RS17920 0.66 +0.2 376,929 + ABZR87_RS17920 0.66 -0.3 377,022 + ABZR87_RS17920 0.76 +0.5 377,022 + ABZR87_RS17920 0.76 -1.2 377,023 - ABZR87_RS17920 0.77 +0.3 377,160 + -1.6 377,167 - +0.4 377,167 - -0.3 377,169 - -0.2 377,225 + +0.3 377,225 + +0.3 377,225 + +0.2 377,225 + -3.3 377,225 + +0.8 377,225 + -0.5 377,225 + +2.1 377,226 - -0.3 377,226 - +0.1 377,226 - -0.0 377,226 - -0.1 377,226 - -0.1
Or see this region's nucleotide sequence