Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17900

Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17895 and ABZR87_RS17900 overlap by 17 nucleotidesABZR87_RS17900 and ABZR87_RS17905 are separated by 27 nucleotides ABZR87_RS17895: ABZR87_RS17895 - ABC transporter ATP-binding protein, at 371,624 to 372,445 _RS17895 ABZR87_RS17900: ABZR87_RS17900 - ABC transporter permease, at 372,429 to 373,259 _RS17900 ABZR87_RS17905: ABZR87_RS17905 - ABC transporter substrate-binding protein, at 373,287 to 374,291 _RS17905 Position (kb) 372 373 374Strain fitness (log2 ratio) -2 -1 0 1 2 3at 371.530 kb on + strandat 371.530 kb on + strandat 371.531 kb on - strandat 371.540 kb on - strandat 372.383 kb on + strandat 372.444 kb on - strandat 372.444 kb on - strandat 372.455 kb on + strandat 372.455 kb on + strandat 372.456 kb on - strandat 372.582 kb on + strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.646 kb on - strand, within ABZR87_RS17900at 372.896 kb on + strand, within ABZR87_RS17900at 372.896 kb on + strand, within ABZR87_RS17900at 372.896 kb on + strand, within ABZR87_RS17900at 372.896 kb on + strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.897 kb on - strand, within ABZR87_RS17900at 372.900 kb on + strand, within ABZR87_RS17900at 372.900 kb on + strand, within ABZR87_RS17900at 372.900 kb on + strand, within ABZR87_RS17900at 372.900 kb on + strand, within ABZR87_RS17900at 372.901 kb on - strand, within ABZR87_RS17900at 372.901 kb on - strand, within ABZR87_RS17900at 372.901 kb on - strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.987 kb on + strand, within ABZR87_RS17900at 372.988 kb on - strand, within ABZR87_RS17900at 372.988 kb on - strand, within ABZR87_RS17900at 372.988 kb on - strand, within ABZR87_RS17900at 372.988 kb on - strand, within ABZR87_RS17900at 372.988 kb on - strand, within ABZR87_RS17900at 373.071 kb on + strand, within ABZR87_RS17900at 373.398 kb on + strand, within ABZR87_RS17905at 373.398 kb on + strand, within ABZR87_RS17905at 373.398 kb on + strand, within ABZR87_RS17905at 373.399 kb on - strand, within ABZR87_RS17905at 373.399 kb on - strand, within ABZR87_RS17905at 373.399 kb on - strand, within ABZR87_RS17905at 373.415 kb on + strand, within ABZR87_RS17905at 373.416 kb on - strand, within ABZR87_RS17905at 373.539 kb on + strand, within ABZR87_RS17905at 373.539 kb on + strand, within ABZR87_RS17905at 373.539 kb on + strand, within ABZR87_RS17905at 373.539 kb on + strand, within ABZR87_RS17905at 373.539 kb on + strand, within ABZR87_RS17905at 373.540 kb on - strand, within ABZR87_RS17905at 373.540 kb on - strand, within ABZR87_RS17905at 373.605 kb on - strand, within ABZR87_RS17905at 373.605 kb on - strand, within ABZR87_RS17905at 373.725 kb on + strand, within ABZR87_RS17905at 373.725 kb on + strand, within ABZR87_RS17905at 373.725 kb on + strand, within ABZR87_RS17905at 373.726 kb on - strand, within ABZR87_RS17905at 373.726 kb on - strand, within ABZR87_RS17905at 373.726 kb on - strand, within ABZR87_RS17905at 373.726 kb on - strand, within ABZR87_RS17905at 373.764 kb on + strand, within ABZR87_RS17905at 373.764 kb on + strand, within ABZR87_RS17905at 373.764 kb on + strand, within ABZR87_RS17905at 373.764 kb on + strand, within ABZR87_RS17905at 373.765 kb on - strand, within ABZR87_RS17905at 373.765 kb on - strand, within ABZR87_RS17905at 373.953 kb on + strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 374.247 kb on + strandat 374.247 kb on + strandat 374.247 kb on + strandat 374.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB
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371,530 + -0.8
371,530 + +0.2
371,531 - +0.8
371,540 - -0.1
372,383 + +0.2
372,444 - -0.2
372,444 - -0.3
372,455 + +0.4
372,455 + +1.4
372,456 - -2.6
372,582 + ABZR87_RS17900 0.18 +0.3
372,646 - ABZR87_RS17900 0.26 -0.2
372,646 - ABZR87_RS17900 0.26 -0.2
372,646 - ABZR87_RS17900 0.26 -0.2
372,646 - ABZR87_RS17900 0.26 +0.1
372,646 - ABZR87_RS17900 0.26 +0.4
372,646 - ABZR87_RS17900 0.26 -0.0
372,646 - ABZR87_RS17900 0.26 -0.6
372,896 + ABZR87_RS17900 0.56 +0.4
372,896 + ABZR87_RS17900 0.56 +3.1
372,896 + ABZR87_RS17900 0.56 +1.5
372,896 + ABZR87_RS17900 0.56 -0.4
372,897 - ABZR87_RS17900 0.56 +0.6
372,897 - ABZR87_RS17900 0.56 +0.3
372,897 - ABZR87_RS17900 0.56 -0.1
372,897 - ABZR87_RS17900 0.56 +0.1
372,897 - ABZR87_RS17900 0.56 -1.0
372,897 - ABZR87_RS17900 0.56 +0.2
372,900 + ABZR87_RS17900 0.57 +0.2
372,900 + ABZR87_RS17900 0.57 -0.6
372,900 + ABZR87_RS17900 0.57 -0.4
372,900 + ABZR87_RS17900 0.57 -1.0
372,901 - ABZR87_RS17900 0.57 -0.2
372,901 - ABZR87_RS17900 0.57 -0.8
372,901 - ABZR87_RS17900 0.57 -0.4
372,987 + ABZR87_RS17900 0.67 +0.7
372,987 + ABZR87_RS17900 0.67 -0.6
372,987 + ABZR87_RS17900 0.67 -0.2
372,987 + ABZR87_RS17900 0.67 +1.9
372,987 + ABZR87_RS17900 0.67 +0.8
372,987 + ABZR87_RS17900 0.67 -1.0
372,987 + ABZR87_RS17900 0.67 +0.2
372,987 + ABZR87_RS17900 0.67 +0.1
372,987 + ABZR87_RS17900 0.67 +0.1
372,987 + ABZR87_RS17900 0.67 -0.6
372,987 + ABZR87_RS17900 0.67 +0.7
372,987 + ABZR87_RS17900 0.67 +0.0
372,987 + ABZR87_RS17900 0.67 -1.0
372,987 + ABZR87_RS17900 0.67 +0.1
372,987 + ABZR87_RS17900 0.67 +1.8
372,987 + ABZR87_RS17900 0.67 -0.6
372,988 - ABZR87_RS17900 0.67 -0.7
372,988 - ABZR87_RS17900 0.67 -2.6
372,988 - ABZR87_RS17900 0.67 -1.2
372,988 - ABZR87_RS17900 0.67 +0.3
372,988 - ABZR87_RS17900 0.67 +0.5
373,071 + ABZR87_RS17900 0.77 -0.1
373,398 + ABZR87_RS17905 0.11 +0.1
373,398 + ABZR87_RS17905 0.11 +1.5
373,398 + ABZR87_RS17905 0.11 -0.4
373,399 - ABZR87_RS17905 0.11 +1.3
373,399 - ABZR87_RS17905 0.11 +0.3
373,399 - ABZR87_RS17905 0.11 -0.9
373,415 + ABZR87_RS17905 0.13 -0.3
373,416 - ABZR87_RS17905 0.13 -0.0
373,539 + ABZR87_RS17905 0.25 +0.7
373,539 + ABZR87_RS17905 0.25 -0.4
373,539 + ABZR87_RS17905 0.25 +0.2
373,539 + ABZR87_RS17905 0.25 -0.3
373,539 + ABZR87_RS17905 0.25 +0.1
373,540 - ABZR87_RS17905 0.25 -0.8
373,540 - ABZR87_RS17905 0.25 +0.1
373,605 - ABZR87_RS17905 0.32 -1.7
373,605 - ABZR87_RS17905 0.32 +0.4
373,725 + ABZR87_RS17905 0.44 -0.9
373,725 + ABZR87_RS17905 0.44 +0.6
373,725 + ABZR87_RS17905 0.44 -1.0
373,726 - ABZR87_RS17905 0.44 -0.0
373,726 - ABZR87_RS17905 0.44 -1.3
373,726 - ABZR87_RS17905 0.44 -1.0
373,726 - ABZR87_RS17905 0.44 -0.5
373,764 + ABZR87_RS17905 0.47 -0.1
373,764 + ABZR87_RS17905 0.47 -0.6
373,764 + ABZR87_RS17905 0.47 -0.7
373,764 + ABZR87_RS17905 0.47 +0.3
373,765 - ABZR87_RS17905 0.48 -0.1
373,765 - ABZR87_RS17905 0.48 -0.2
373,953 + ABZR87_RS17905 0.66 -0.1
373,954 - ABZR87_RS17905 0.66 +0.4
373,954 - ABZR87_RS17905 0.66 -1.3
373,954 - ABZR87_RS17905 0.66 -0.2
373,954 - ABZR87_RS17905 0.66 +0.4
373,954 - ABZR87_RS17905 0.66 -2.3
373,954 - ABZR87_RS17905 0.66 -0.9
374,247 + -0.3
374,247 + +0.1
374,247 + -0.1
374,253 - +0.1

Or see this region's nucleotide sequence