Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17555 and ABZR87_RS17560 are separated by 150 nucleotides ABZR87_RS17560 and ABZR87_RS17565 overlap by 17 nucleotides ABZR87_RS17565 and ABZR87_RS17570 are separated by 95 nucleotides
ABZR87_RS17555: ABZR87_RS17555 - amidohydrolase family protein, at 300,568 to 301,500
_RS17555
ABZR87_RS17560: ABZR87_RS17560 - ABC transporter substrate-binding protein, at 301,651 to 302,859
_RS17560
ABZR87_RS17565: ABZR87_RS17565 - helix-turn-helix transcriptional regulator, at 302,843 to 303,646
_RS17565
ABZR87_RS17570: ABZR87_RS17570 - hypothetical protein, at 303,742 to 304,038
_RS17570
Position (kb) 301
302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 300.730 kb on + strand, within ABZR87_RS17555 at 300.730 kb on + strand, within ABZR87_RS17555 at 300.730 kb on + strand, within ABZR87_RS17555 at 300.731 kb on - strand, within ABZR87_RS17555 at 300.731 kb on - strand, within ABZR87_RS17555 at 300.731 kb on - strand, within ABZR87_RS17555 at 300.796 kb on + strand, within ABZR87_RS17555 at 300.797 kb on - strand, within ABZR87_RS17555 at 300.797 kb on - strand, within ABZR87_RS17555 at 300.856 kb on + strand, within ABZR87_RS17555 at 300.933 kb on + strand, within ABZR87_RS17555 at 300.934 kb on - strand, within ABZR87_RS17555 at 301.088 kb on + strand, within ABZR87_RS17555 at 301.089 kb on - strand, within ABZR87_RS17555 at 301.089 kb on - strand, within ABZR87_RS17555 at 301.089 kb on - strand, within ABZR87_RS17555 at 301.089 kb on - strand, within ABZR87_RS17555 at 301.261 kb on + strand, within ABZR87_RS17555 at 301.262 kb on - strand, within ABZR87_RS17555 at 301.262 kb on - strand, within ABZR87_RS17555 at 301.262 kb on - strand, within ABZR87_RS17555 at 301.262 kb on - strand, within ABZR87_RS17555 at 301.292 kb on - strand, within ABZR87_RS17555 at 301.292 kb on - strand, within ABZR87_RS17555 at 301.292 kb on - strand, within ABZR87_RS17555 at 301.389 kb on + strand, within ABZR87_RS17555 at 301.389 kb on + strand, within ABZR87_RS17555 at 301.390 kb on - strand, within ABZR87_RS17555 at 301.390 kb on - strand, within ABZR87_RS17555 at 301.390 kb on - strand, within ABZR87_RS17555 at 301.390 kb on - strand, within ABZR87_RS17555 at 301.390 kb on - strand, within ABZR87_RS17555 at 301.486 kb on + strand at 301.487 kb on - strand at 301.768 kb on + strand at 301.768 kb on + strand at 301.768 kb on + strand at 301.769 kb on - strand at 302.011 kb on + strand, within ABZR87_RS17560 at 302.011 kb on + strand, within ABZR87_RS17560 at 302.011 kb on + strand, within ABZR87_RS17560 at 302.012 kb on - strand, within ABZR87_RS17560 at 302.084 kb on - strand, within ABZR87_RS17560 at 302.084 kb on - strand, within ABZR87_RS17560 at 302.112 kb on + strand, within ABZR87_RS17560 at 302.149 kb on + strand, within ABZR87_RS17560 at 302.149 kb on + strand, within ABZR87_RS17560 at 302.150 kb on - strand, within ABZR87_RS17560 at 302.150 kb on - strand, within ABZR87_RS17560 at 302.167 kb on + strand, within ABZR87_RS17560 at 302.167 kb on + strand, within ABZR87_RS17560 at 302.167 kb on + strand, within ABZR87_RS17560 at 302.167 kb on + strand, within ABZR87_RS17560 at 302.168 kb on - strand, within ABZR87_RS17560 at 302.278 kb on + strand, within ABZR87_RS17560 at 302.279 kb on - strand, within ABZR87_RS17560 at 302.524 kb on + strand, within ABZR87_RS17560 at 302.524 kb on + strand, within ABZR87_RS17560 at 302.524 kb on + strand, within ABZR87_RS17560 at 302.524 kb on + strand, within ABZR87_RS17560 at 302.524 kb on + strand, within ABZR87_RS17560 at 302.569 kb on + strand, within ABZR87_RS17560 at 302.569 kb on + strand, within ABZR87_RS17560 at 302.569 kb on + strand, within ABZR87_RS17560 at 302.569 kb on + strand, within ABZR87_RS17560 at 302.570 kb on - strand, within ABZR87_RS17560 at 302.587 kb on + strand, within ABZR87_RS17560 at 302.587 kb on + strand, within ABZR87_RS17560 at 302.588 kb on - strand, within ABZR87_RS17560 at 302.671 kb on + strand, within ABZR87_RS17560 at 302.671 kb on + strand, within ABZR87_RS17560 at 302.671 kb on + strand, within ABZR87_RS17560 at 302.671 kb on + strand, within ABZR87_RS17560 at 302.672 kb on - strand, within ABZR87_RS17560 at 302.672 kb on - strand, within ABZR87_RS17560 at 302.672 kb on - strand, within ABZR87_RS17560 at 302.672 kb on - strand, within ABZR87_RS17560 at 302.672 kb on - strand, within ABZR87_RS17560 at 302.672 kb on - strand, within ABZR87_RS17560 at 302.672 kb on - strand, within ABZR87_RS17560 at 302.722 kb on + strand, within ABZR87_RS17560 at 302.722 kb on + strand, within ABZR87_RS17560 at 302.723 kb on - strand, within ABZR87_RS17560 at 302.771 kb on - strand at 302.773 kb on + strand at 302.773 kb on + strand at 302.774 kb on - strand at 302.774 kb on - strand at 302.814 kb on + strand at 302.815 kb on - strand at 303.128 kb on - strand, within ABZR87_RS17565 at 303.145 kb on + strand, within ABZR87_RS17565 at 303.146 kb on - strand, within ABZR87_RS17565 at 303.378 kb on + strand, within ABZR87_RS17565 at 303.379 kb on - strand, within ABZR87_RS17565 at 303.426 kb on - strand, within ABZR87_RS17565 at 303.585 kb on + strand at 303.586 kb on - strand at 303.586 kb on - strand at 303.586 kb on - strand at 303.586 kb on - strand at 303.586 kb on - strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.704 kb on + strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand at 303.705 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 300,730 + ABZR87_RS17555 0.17 -0.6 300,730 + ABZR87_RS17555 0.17 -0.0 300,730 + ABZR87_RS17555 0.17 -0.2 300,731 - ABZR87_RS17555 0.17 -0.7 300,731 - ABZR87_RS17555 0.17 +0.2 300,731 - ABZR87_RS17555 0.17 -0.7 300,796 + ABZR87_RS17555 0.24 +0.8 300,797 - ABZR87_RS17555 0.25 -0.5 300,797 - ABZR87_RS17555 0.25 +0.2 300,856 + ABZR87_RS17555 0.31 +0.7 300,933 + ABZR87_RS17555 0.39 +0.2 300,934 - ABZR87_RS17555 0.39 -0.4 301,088 + ABZR87_RS17555 0.56 -0.1 301,089 - ABZR87_RS17555 0.56 -0.6 301,089 - ABZR87_RS17555 0.56 +0.1 301,089 - ABZR87_RS17555 0.56 -2.4 301,089 - ABZR87_RS17555 0.56 -0.3 301,261 + ABZR87_RS17555 0.74 +1.5 301,262 - ABZR87_RS17555 0.74 -1.6 301,262 - ABZR87_RS17555 0.74 -2.2 301,262 - ABZR87_RS17555 0.74 -0.4 301,262 - ABZR87_RS17555 0.74 +0.6 301,292 - ABZR87_RS17555 0.78 -1.0 301,292 - ABZR87_RS17555 0.78 -0.6 301,292 - ABZR87_RS17555 0.78 +0.1 301,389 + ABZR87_RS17555 0.88 +0.5 301,389 + ABZR87_RS17555 0.88 -0.5 301,390 - ABZR87_RS17555 0.88 -0.8 301,390 - ABZR87_RS17555 0.88 -0.6 301,390 - ABZR87_RS17555 0.88 +1.1 301,390 - ABZR87_RS17555 0.88 +0.5 301,390 - ABZR87_RS17555 0.88 -1.7 301,486 + -0.7 301,487 - +0.2 301,768 + -1.8 301,768 + -0.8 301,768 + -0.5 301,769 - -0.0 302,011 + ABZR87_RS17560 0.30 +0.5 302,011 + ABZR87_RS17560 0.30 +0.6 302,011 + ABZR87_RS17560 0.30 +0.1 302,012 - ABZR87_RS17560 0.30 +1.5 302,084 - ABZR87_RS17560 0.36 +0.5 302,084 - ABZR87_RS17560 0.36 -0.4 302,112 + ABZR87_RS17560 0.38 +0.1 302,149 + ABZR87_RS17560 0.41 +0.0 302,149 + ABZR87_RS17560 0.41 -0.3 302,150 - ABZR87_RS17560 0.41 -2.0 302,150 - ABZR87_RS17560 0.41 -0.6 302,167 + ABZR87_RS17560 0.43 -0.7 302,167 + ABZR87_RS17560 0.43 +0.2 302,167 + ABZR87_RS17560 0.43 -0.3 302,167 + ABZR87_RS17560 0.43 +0.4 302,168 - ABZR87_RS17560 0.43 +0.4 302,278 + ABZR87_RS17560 0.52 -0.7 302,279 - ABZR87_RS17560 0.52 -1.2 302,524 + ABZR87_RS17560 0.72 +0.3 302,524 + ABZR87_RS17560 0.72 -0.6 302,524 + ABZR87_RS17560 0.72 -0.2 302,524 + ABZR87_RS17560 0.72 -0.9 302,524 + ABZR87_RS17560 0.72 +0.1 302,569 + ABZR87_RS17560 0.76 -0.5 302,569 + ABZR87_RS17560 0.76 -0.6 302,569 + ABZR87_RS17560 0.76 -0.4 302,569 + ABZR87_RS17560 0.76 -0.9 302,570 - ABZR87_RS17560 0.76 +0.6 302,587 + ABZR87_RS17560 0.77 +0.7 302,587 + ABZR87_RS17560 0.77 -0.7 302,588 - ABZR87_RS17560 0.78 +0.5 302,671 + ABZR87_RS17560 0.84 +0.2 302,671 + ABZR87_RS17560 0.84 -0.2 302,671 + ABZR87_RS17560 0.84 -0.8 302,671 + ABZR87_RS17560 0.84 +0.8 302,672 - ABZR87_RS17560 0.84 -0.6 302,672 - ABZR87_RS17560 0.84 +1.2 302,672 - ABZR87_RS17560 0.84 -0.5 302,672 - ABZR87_RS17560 0.84 -2.0 302,672 - ABZR87_RS17560 0.84 -0.2 302,672 - ABZR87_RS17560 0.84 +0.5 302,672 - ABZR87_RS17560 0.84 -0.8 302,722 + ABZR87_RS17560 0.89 -0.7 302,722 + ABZR87_RS17560 0.89 +0.8 302,723 - ABZR87_RS17560 0.89 -1.1 302,771 - +1.0 302,773 + +0.4 302,773 + -1.3 302,774 - -0.4 302,774 - -0.2 302,814 + +0.2 302,815 - -1.3 303,128 - ABZR87_RS17565 0.35 -3.1 303,145 + ABZR87_RS17565 0.38 -2.1 303,146 - ABZR87_RS17565 0.38 -0.8 303,378 + ABZR87_RS17565 0.67 -0.3 303,379 - ABZR87_RS17565 0.67 -0.1 303,426 - ABZR87_RS17565 0.73 +0.2 303,585 + -0.8 303,586 - +0.4 303,586 - +0.1 303,586 - +0.6 303,586 - +0.1 303,586 - +0.3 303,704 + +1.5 303,704 + +0.1 303,704 + +3.8 303,704 + +0.5 303,704 + -0.2 303,704 + +0.3 303,704 + -0.1 303,705 - -1.5 303,705 - +0.6 303,705 - -2.1 303,705 - +2.0 303,705 - -0.7 303,705 - -0.5 303,705 - +0.7 303,705 - +0.8
Or see this region's nucleotide sequence