Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15950

Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15945 and ABZR87_RS15950 overlap by 4 nucleotidesABZR87_RS15950 and ABZR87_RS15955 overlap by 20 nucleotidesABZR87_RS15955 and ABZR87_RS15960 overlap by 29 nucleotides ABZR87_RS15945: ABZR87_RS15945 - pyrroloquinoline quinone biosynthesis protein PqqB, at 3,370,061 to 3,370,978 _RS15945 ABZR87_RS15950: ABZR87_RS15950 - pyrroloquinoline-quinone synthase PqqC, at 3,370,975 to 3,371,685 _RS15950 ABZR87_RS15955: ABZR87_RS15955 - pyrroloquinoline quinone biosynthesis peptide chaperone PqqD, at 3,371,666 to 3,371,938 _RS15955 ABZR87_RS15960: ABZR87_RS15960 - pyrroloquinoline quinone biosynthesis protein PqqE, at 3,371,910 to 3,373,112 _RS15960 Position (kb) 3370 3371 3372Strain fitness (log2 ratio) -2 -1 0 1 2at 3370.068 kb on + strandat 3370.069 kb on - strandat 3370.069 kb on - strandat 3370.069 kb on - strandat 3370.069 kb on - strandat 3370.298 kb on - strand, within ABZR87_RS15945at 3370.391 kb on + strand, within ABZR87_RS15945at 3370.391 kb on + strand, within ABZR87_RS15945at 3370.391 kb on + strand, within ABZR87_RS15945at 3370.391 kb on + strand, within ABZR87_RS15945at 3370.392 kb on - strand, within ABZR87_RS15945at 3370.457 kb on + strand, within ABZR87_RS15945at 3370.457 kb on + strand, within ABZR87_RS15945at 3370.652 kb on + strand, within ABZR87_RS15945at 3370.652 kb on + strand, within ABZR87_RS15945at 3370.975 kb on - strandat 3371.041 kb on + strandat 3371.128 kb on + strand, within ABZR87_RS15950at 3371.128 kb on + strand, within ABZR87_RS15950at 3371.128 kb on + strand, within ABZR87_RS15950at 3371.129 kb on - strand, within ABZR87_RS15950at 3371.131 kb on + strand, within ABZR87_RS15950at 3371.132 kb on - strand, within ABZR87_RS15950at 3371.273 kb on + strand, within ABZR87_RS15950at 3371.356 kb on + strand, within ABZR87_RS15950at 3371.356 kb on + strand, within ABZR87_RS15950at 3371.356 kb on + strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.357 kb on - strand, within ABZR87_RS15950at 3371.467 kb on + strand, within ABZR87_RS15950at 3371.498 kb on - strand, within ABZR87_RS15950at 3371.563 kb on + strand, within ABZR87_RS15950at 3371.759 kb on + strand, within ABZR87_RS15955at 3371.759 kb on + strand, within ABZR87_RS15955at 3371.759 kb on + strand, within ABZR87_RS15955at 3372.057 kb on + strand, within ABZR87_RS15960at 3372.103 kb on + strand, within ABZR87_RS15960at 3372.103 kb on + strand, within ABZR87_RS15960at 3372.103 kb on + strand, within ABZR87_RS15960at 3372.103 kb on + strand, within ABZR87_RS15960at 3372.104 kb on - strand, within ABZR87_RS15960at 3372.104 kb on - strand, within ABZR87_RS15960at 3372.104 kb on - strand, within ABZR87_RS15960at 3372.216 kb on + strand, within ABZR87_RS15960at 3372.216 kb on + strand, within ABZR87_RS15960at 3372.217 kb on - strand, within ABZR87_RS15960at 3372.293 kb on + strand, within ABZR87_RS15960at 3372.294 kb on - strand, within ABZR87_RS15960at 3372.297 kb on - strand, within ABZR87_RS15960at 3372.493 kb on - strand, within ABZR87_RS15960at 3372.517 kb on - strand, within ABZR87_RS15960at 3372.517 kb on - strand, within ABZR87_RS15960at 3372.519 kb on + strand, within ABZR87_RS15960at 3372.520 kb on - strand, within ABZR87_RS15960at 3372.520 kb on - strand, within ABZR87_RS15960at 3372.600 kb on + strand, within ABZR87_RS15960at 3372.636 kb on + strand, within ABZR87_RS15960at 3372.636 kb on + strand, within ABZR87_RS15960at 3372.637 kb on - strand, within ABZR87_RS15960at 3372.652 kb on - strand, within ABZR87_RS15960

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB
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3,370,068 + +0.0
3,370,069 - +1.3
3,370,069 - -0.1
3,370,069 - +0.8
3,370,069 - -2.7
3,370,298 - ABZR87_RS15945 0.26 +1.0
3,370,391 + ABZR87_RS15945 0.36 +0.2
3,370,391 + ABZR87_RS15945 0.36 -0.2
3,370,391 + ABZR87_RS15945 0.36 -1.0
3,370,391 + ABZR87_RS15945 0.36 +0.9
3,370,392 - ABZR87_RS15945 0.36 -1.4
3,370,457 + ABZR87_RS15945 0.43 -2.3
3,370,457 + ABZR87_RS15945 0.43 -0.4
3,370,652 + ABZR87_RS15945 0.64 -0.2
3,370,652 + ABZR87_RS15945 0.64 +0.1
3,370,975 - -1.0
3,371,041 + +0.6
3,371,128 + ABZR87_RS15950 0.22 -0.1
3,371,128 + ABZR87_RS15950 0.22 +0.1
3,371,128 + ABZR87_RS15950 0.22 -0.6
3,371,129 - ABZR87_RS15950 0.22 -0.5
3,371,131 + ABZR87_RS15950 0.22 -0.3
3,371,132 - ABZR87_RS15950 0.22 +0.2
3,371,273 + ABZR87_RS15950 0.42 +0.3
3,371,356 + ABZR87_RS15950 0.54 -0.0
3,371,356 + ABZR87_RS15950 0.54 -0.9
3,371,356 + ABZR87_RS15950 0.54 -0.4
3,371,357 - ABZR87_RS15950 0.54 +0.1
3,371,357 - ABZR87_RS15950 0.54 -0.9
3,371,357 - ABZR87_RS15950 0.54 -0.1
3,371,357 - ABZR87_RS15950 0.54 +0.2
3,371,357 - ABZR87_RS15950 0.54 -1.9
3,371,357 - ABZR87_RS15950 0.54 -1.8
3,371,467 + ABZR87_RS15950 0.69 +0.0
3,371,498 - ABZR87_RS15950 0.74 -0.6
3,371,563 + ABZR87_RS15950 0.83 -0.3
3,371,759 + ABZR87_RS15955 0.34 -1.7
3,371,759 + ABZR87_RS15955 0.34 -2.0
3,371,759 + ABZR87_RS15955 0.34 -1.4
3,372,057 + ABZR87_RS15960 0.12 -0.2
3,372,103 + ABZR87_RS15960 0.16 -0.3
3,372,103 + ABZR87_RS15960 0.16 -2.2
3,372,103 + ABZR87_RS15960 0.16 +0.0
3,372,103 + ABZR87_RS15960 0.16 -0.6
3,372,104 - ABZR87_RS15960 0.16 +1.8
3,372,104 - ABZR87_RS15960 0.16 +0.5
3,372,104 - ABZR87_RS15960 0.16 -0.8
3,372,216 + ABZR87_RS15960 0.25 +0.6
3,372,216 + ABZR87_RS15960 0.25 +0.3
3,372,217 - ABZR87_RS15960 0.26 -0.7
3,372,293 + ABZR87_RS15960 0.32 -0.6
3,372,294 - ABZR87_RS15960 0.32 +0.6
3,372,297 - ABZR87_RS15960 0.32 -1.2
3,372,493 - ABZR87_RS15960 0.48 +0.1
3,372,517 - ABZR87_RS15960 0.50 +0.9
3,372,517 - ABZR87_RS15960 0.50 -0.4
3,372,519 + ABZR87_RS15960 0.51 +0.2
3,372,520 - ABZR87_RS15960 0.51 -0.2
3,372,520 - ABZR87_RS15960 0.51 +0.4
3,372,600 + ABZR87_RS15960 0.57 -1.1
3,372,636 + ABZR87_RS15960 0.60 +0.2
3,372,636 + ABZR87_RS15960 0.60 -0.8
3,372,637 - ABZR87_RS15960 0.60 +0.1
3,372,652 - ABZR87_RS15960 0.62 -0.5

Or see this region's nucleotide sequence