Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15370

Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15360 and ABZR87_RS15365 are separated by 164 nucleotidesABZR87_RS15365 and ABZR87_RS15370 are separated by 9 nucleotidesABZR87_RS15370 and ABZR87_RS15375 overlap by 4 nucleotidesABZR87_RS15375 and ABZR87_RS15380 are separated by 10 nucleotides ABZR87_RS15360: ABZR87_RS15360 - BMP family ABC transporter substrate-binding protein, at 3,233,530 to 3,234,687 _RS15360 ABZR87_RS15365: ABZR87_RS15365 - YkvA family protein, at 3,234,852 to 3,235,148 _RS15365 ABZR87_RS15370: ABZR87_RS15370 - quinone oxidoreductase, at 3,235,158 to 3,236,138 _RS15370 ABZR87_RS15375: ABZR87_RS15375 - methylglyoxal synthase, at 3,236,135 to 3,236,575 _RS15375 ABZR87_RS15380: ABZR87_RS15380 - SDR family oxidoreductase, at 3,236,586 to 3,237,377 _RS15380 Position (kb) 3235 3236 3237Strain fitness (log2 ratio) -2 -1 0 1 2at 3234.304 kb on + strand, within ABZR87_RS15360at 3234.305 kb on - strand, within ABZR87_RS15360at 3234.305 kb on - strand, within ABZR87_RS15360at 3234.305 kb on - strand, within ABZR87_RS15360at 3234.385 kb on + strand, within ABZR87_RS15360at 3234.385 kb on + strand, within ABZR87_RS15360at 3234.385 kb on + strand, within ABZR87_RS15360at 3234.385 kb on + strand, within ABZR87_RS15360at 3234.386 kb on - strand, within ABZR87_RS15360at 3234.386 kb on - strand, within ABZR87_RS15360at 3234.388 kb on + strand, within ABZR87_RS15360at 3234.388 kb on + strand, within ABZR87_RS15360at 3234.388 kb on + strand, within ABZR87_RS15360at 3234.389 kb on - strand, within ABZR87_RS15360at 3234.389 kb on - strand, within ABZR87_RS15360at 3234.482 kb on - strand, within ABZR87_RS15360at 3234.482 kb on - strand, within ABZR87_RS15360at 3234.647 kb on - strandat 3234.652 kb on + strandat 3234.653 kb on - strandat 3234.653 kb on - strandat 3234.653 kb on - strandat 3234.653 kb on - strandat 3234.693 kb on - strandat 3234.792 kb on - strandat 3234.975 kb on + strand, within ABZR87_RS15365at 3234.976 kb on - strand, within ABZR87_RS15365at 3234.976 kb on - strand, within ABZR87_RS15365at 3234.976 kb on - strand, within ABZR87_RS15365at 3234.976 kb on - strand, within ABZR87_RS15365at 3234.976 kb on - strand, within ABZR87_RS15365at 3234.976 kb on - strand, within ABZR87_RS15365at 3234.976 kb on - strand, within ABZR87_RS15365at 3235.159 kb on + strandat 3235.160 kb on - strandat 3235.330 kb on + strand, within ABZR87_RS15370at 3235.330 kb on + strand, within ABZR87_RS15370at 3235.330 kb on + strand, within ABZR87_RS15370at 3235.330 kb on + strand, within ABZR87_RS15370at 3235.330 kb on + strand, within ABZR87_RS15370at 3235.331 kb on - strand, within ABZR87_RS15370at 3235.331 kb on - strand, within ABZR87_RS15370at 3235.423 kb on + strand, within ABZR87_RS15370at 3235.423 kb on + strand, within ABZR87_RS15370at 3235.424 kb on - strand, within ABZR87_RS15370at 3235.424 kb on - strand, within ABZR87_RS15370at 3235.424 kb on - strand, within ABZR87_RS15370at 3235.424 kb on - strand, within ABZR87_RS15370at 3235.424 kb on - strand, within ABZR87_RS15370at 3235.495 kb on + strand, within ABZR87_RS15370at 3235.495 kb on + strand, within ABZR87_RS15370at 3235.495 kb on + strand, within ABZR87_RS15370at 3235.496 kb on - strand, within ABZR87_RS15370at 3235.562 kb on - strand, within ABZR87_RS15370at 3235.710 kb on - strand, within ABZR87_RS15370at 3235.747 kb on + strand, within ABZR87_RS15370at 3235.815 kb on + strand, within ABZR87_RS15370at 3235.876 kb on + strand, within ABZR87_RS15370at 3235.876 kb on + strand, within ABZR87_RS15370at 3235.877 kb on - strand, within ABZR87_RS15370at 3235.979 kb on - strand, within ABZR87_RS15370at 3235.979 kb on - strand, within ABZR87_RS15370at 3235.996 kb on + strand, within ABZR87_RS15370at 3236.008 kb on + strand, within ABZR87_RS15370at 3236.008 kb on + strand, within ABZR87_RS15370at 3236.008 kb on + strand, within ABZR87_RS15370at 3236.009 kb on - strand, within ABZR87_RS15370at 3236.009 kb on - strand, within ABZR87_RS15370at 3236.009 kb on - strand, within ABZR87_RS15370at 3236.080 kb on + strandat 3236.080 kb on + strandat 3236.080 kb on + strandat 3236.081 kb on - strandat 3236.081 kb on - strandat 3236.554 kb on + strandat 3236.569 kb on + strandat 3236.569 kb on + strandat 3236.569 kb on + strandat 3236.570 kb on - strandat 3236.570 kb on - strandat 3236.588 kb on - strandat 3236.737 kb on - strand, within ABZR87_RS15380

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB
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3,234,304 + ABZR87_RS15360 0.67 -0.2
3,234,305 - ABZR87_RS15360 0.67 -0.4
3,234,305 - ABZR87_RS15360 0.67 +0.7
3,234,305 - ABZR87_RS15360 0.67 -1.0
3,234,385 + ABZR87_RS15360 0.74 +0.9
3,234,385 + ABZR87_RS15360 0.74 +0.6
3,234,385 + ABZR87_RS15360 0.74 +0.7
3,234,385 + ABZR87_RS15360 0.74 +0.6
3,234,386 - ABZR87_RS15360 0.74 -0.8
3,234,386 - ABZR87_RS15360 0.74 +0.7
3,234,388 + ABZR87_RS15360 0.74 -0.0
3,234,388 + ABZR87_RS15360 0.74 -0.6
3,234,388 + ABZR87_RS15360 0.74 +0.5
3,234,389 - ABZR87_RS15360 0.74 -0.1
3,234,389 - ABZR87_RS15360 0.74 -0.5
3,234,482 - ABZR87_RS15360 0.82 +0.5
3,234,482 - ABZR87_RS15360 0.82 -0.5
3,234,647 - -0.1
3,234,652 + -1.2
3,234,653 - -1.5
3,234,653 - +0.1
3,234,653 - -0.1
3,234,653 - +0.3
3,234,693 - -0.2
3,234,792 - +2.0
3,234,975 + ABZR87_RS15365 0.41 +0.4
3,234,976 - ABZR87_RS15365 0.42 +0.0
3,234,976 - ABZR87_RS15365 0.42 -2.3
3,234,976 - ABZR87_RS15365 0.42 -0.0
3,234,976 - ABZR87_RS15365 0.42 -0.8
3,234,976 - ABZR87_RS15365 0.42 -1.3
3,234,976 - ABZR87_RS15365 0.42 -1.2
3,234,976 - ABZR87_RS15365 0.42 -0.0
3,235,159 + -1.5
3,235,160 - +1.1
3,235,330 + ABZR87_RS15370 0.18 +1.4
3,235,330 + ABZR87_RS15370 0.18 +0.6
3,235,330 + ABZR87_RS15370 0.18 +0.2
3,235,330 + ABZR87_RS15370 0.18 +0.4
3,235,330 + ABZR87_RS15370 0.18 -0.3
3,235,331 - ABZR87_RS15370 0.18 +1.8
3,235,331 - ABZR87_RS15370 0.18 -0.2
3,235,423 + ABZR87_RS15370 0.27 -0.4
3,235,423 + ABZR87_RS15370 0.27 -0.7
3,235,424 - ABZR87_RS15370 0.27 -0.3
3,235,424 - ABZR87_RS15370 0.27 +0.8
3,235,424 - ABZR87_RS15370 0.27 +0.0
3,235,424 - ABZR87_RS15370 0.27 -0.6
3,235,424 - ABZR87_RS15370 0.27 +0.6
3,235,495 + ABZR87_RS15370 0.34 -1.1
3,235,495 + ABZR87_RS15370 0.34 -0.5
3,235,495 + ABZR87_RS15370 0.34 -1.5
3,235,496 - ABZR87_RS15370 0.34 +0.2
3,235,562 - ABZR87_RS15370 0.41 -0.4
3,235,710 - ABZR87_RS15370 0.56 +0.3
3,235,747 + ABZR87_RS15370 0.60 +0.1
3,235,815 + ABZR87_RS15370 0.67 -0.4
3,235,876 + ABZR87_RS15370 0.73 +0.4
3,235,876 + ABZR87_RS15370 0.73 -0.6
3,235,877 - ABZR87_RS15370 0.73 -0.3
3,235,979 - ABZR87_RS15370 0.84 -0.5
3,235,979 - ABZR87_RS15370 0.84 +0.2
3,235,996 + ABZR87_RS15370 0.85 +0.8
3,236,008 + ABZR87_RS15370 0.87 +0.6
3,236,008 + ABZR87_RS15370 0.87 +0.9
3,236,008 + ABZR87_RS15370 0.87 +0.2
3,236,009 - ABZR87_RS15370 0.87 +0.1
3,236,009 - ABZR87_RS15370 0.87 +1.5
3,236,009 - ABZR87_RS15370 0.87 +0.4
3,236,080 + +0.7
3,236,080 + +0.0
3,236,080 + -0.6
3,236,081 - -1.3
3,236,081 - +0.4
3,236,554 + -0.3
3,236,569 + +0.7
3,236,569 + -0.2
3,236,569 + +0.9
3,236,570 - +0.9
3,236,570 - +1.0
3,236,588 - -0.8
3,236,737 - ABZR87_RS15380 0.19 -1.0

Or see this region's nucleotide sequence