Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09285 and ABZR87_RS09290 are separated by 206 nucleotides ABZR87_RS09290 and ABZR87_RS09295 are separated by 78 nucleotides
ABZR87_RS09285: ABZR87_RS09285 - CaiB/BaiF CoA-transferase family protein, at 1,963,540 to 1,964,760
_RS09285
ABZR87_RS09290: ABZR87_RS09290 - alanine--tRNA ligase, at 1,964,967 to 1,967,609
_RS09290
ABZR87_RS09295: ABZR87_RS09295 - glycosyl transferase, at 1,967,688 to 1,969,508
_RS09295
Position (kb) 1964
1965
1966
1967
1968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1964.028 kb on - strand, within ABZR87_RS09285 at 1964.088 kb on - strand, within ABZR87_RS09285 at 1964.088 kb on - strand, within ABZR87_RS09285 at 1964.088 kb on - strand, within ABZR87_RS09285 at 1964.131 kb on + strand, within ABZR87_RS09285 at 1964.147 kb on + strand, within ABZR87_RS09285 at 1964.148 kb on - strand, within ABZR87_RS09285 at 1964.148 kb on - strand, within ABZR87_RS09285 at 1964.148 kb on - strand, within ABZR87_RS09285 at 1964.148 kb on - strand, within ABZR87_RS09285 at 1964.207 kb on + strand, within ABZR87_RS09285 at 1964.207 kb on + strand, within ABZR87_RS09285 at 1964.207 kb on + strand, within ABZR87_RS09285 at 1964.207 kb on + strand, within ABZR87_RS09285 at 1964.208 kb on - strand, within ABZR87_RS09285 at 1964.208 kb on - strand, within ABZR87_RS09285 at 1964.208 kb on - strand, within ABZR87_RS09285 at 1964.208 kb on - strand, within ABZR87_RS09285 at 1964.208 kb on - strand, within ABZR87_RS09285 at 1964.208 kb on - strand, within ABZR87_RS09285 at 1964.208 kb on - strand, within ABZR87_RS09285 at 1964.208 kb on - strand, within ABZR87_RS09285 at 1964.328 kb on - strand, within ABZR87_RS09285 at 1964.346 kb on - strand, within ABZR87_RS09285 at 1964.346 kb on - strand, within ABZR87_RS09285 at 1964.382 kb on - strand, within ABZR87_RS09285 at 1964.417 kb on + strand, within ABZR87_RS09285 at 1964.418 kb on - strand, within ABZR87_RS09285 at 1964.430 kb on - strand, within ABZR87_RS09285 at 1964.453 kb on + strand, within ABZR87_RS09285 at 1964.453 kb on + strand, within ABZR87_RS09285 at 1964.454 kb on - strand, within ABZR87_RS09285 at 1964.454 kb on - strand, within ABZR87_RS09285 at 1964.564 kb on + strand, within ABZR87_RS09285 at 1964.565 kb on - strand, within ABZR87_RS09285 at 1964.567 kb on + strand, within ABZR87_RS09285 at 1964.568 kb on - strand, within ABZR87_RS09285 at 1964.568 kb on - strand, within ABZR87_RS09285 at 1964.798 kb on + strand at 1964.799 kb on - strand at 1964.799 kb on - strand at 1964.888 kb on + strand at 1967.612 kb on + strand at 1967.612 kb on + strand at 1967.613 kb on - strand at 1967.613 kb on - strand at 1967.613 kb on - strand at 1967.801 kb on + strand at 1967.801 kb on + strand at 1967.801 kb on + strand at 1967.802 kb on - strand at 1967.802 kb on - strand at 1967.881 kb on + strand, within ABZR87_RS09295 at 1967.881 kb on + strand, within ABZR87_RS09295 at 1967.881 kb on + strand, within ABZR87_RS09295 at 1967.882 kb on - strand, within ABZR87_RS09295 at 1967.989 kb on + strand, within ABZR87_RS09295 at 1968.084 kb on + strand, within ABZR87_RS09295 at 1968.298 kb on + strand, within ABZR87_RS09295 at 1968.298 kb on + strand, within ABZR87_RS09295 at 1968.298 kb on + strand, within ABZR87_RS09295 at 1968.299 kb on - strand, within ABZR87_RS09295 at 1968.299 kb on - strand, within ABZR87_RS09295 at 1968.299 kb on - strand, within ABZR87_RS09295 at 1968.385 kb on + strand, within ABZR87_RS09295 at 1968.385 kb on + strand, within ABZR87_RS09295 at 1968.385 kb on + strand, within ABZR87_RS09295 at 1968.556 kb on + strand, within ABZR87_RS09295 at 1968.556 kb on + strand, within ABZR87_RS09295 at 1968.557 kb on - strand, within ABZR87_RS09295 at 1968.557 kb on - strand, within ABZR87_RS09295
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 1,964,028 - ABZR87_RS09285 0.40 -2.9 1,964,088 - ABZR87_RS09285 0.45 +1.2 1,964,088 - ABZR87_RS09285 0.45 +0.2 1,964,088 - ABZR87_RS09285 0.45 -0.5 1,964,131 + ABZR87_RS09285 0.48 -0.8 1,964,147 + ABZR87_RS09285 0.50 -0.9 1,964,148 - ABZR87_RS09285 0.50 -0.3 1,964,148 - ABZR87_RS09285 0.50 -0.4 1,964,148 - ABZR87_RS09285 0.50 -0.6 1,964,148 - ABZR87_RS09285 0.50 -0.1 1,964,207 + ABZR87_RS09285 0.55 -1.1 1,964,207 + ABZR87_RS09285 0.55 +1.1 1,964,207 + ABZR87_RS09285 0.55 -1.8 1,964,207 + ABZR87_RS09285 0.55 -0.1 1,964,208 - ABZR87_RS09285 0.55 -1.7 1,964,208 - ABZR87_RS09285 0.55 -0.5 1,964,208 - ABZR87_RS09285 0.55 -0.6 1,964,208 - ABZR87_RS09285 0.55 +0.1 1,964,208 - ABZR87_RS09285 0.55 -1.1 1,964,208 - ABZR87_RS09285 0.55 -0.3 1,964,208 - ABZR87_RS09285 0.55 +0.3 1,964,208 - ABZR87_RS09285 0.55 -0.8 1,964,328 - ABZR87_RS09285 0.65 +0.1 1,964,346 - ABZR87_RS09285 0.66 -0.4 1,964,346 - ABZR87_RS09285 0.66 -3.4 1,964,382 - ABZR87_RS09285 0.69 +0.1 1,964,417 + ABZR87_RS09285 0.72 -0.8 1,964,418 - ABZR87_RS09285 0.72 -2.7 1,964,430 - ABZR87_RS09285 0.73 -1.3 1,964,453 + ABZR87_RS09285 0.75 -1.5 1,964,453 + ABZR87_RS09285 0.75 +0.4 1,964,454 - ABZR87_RS09285 0.75 -1.0 1,964,454 - ABZR87_RS09285 0.75 -0.9 1,964,564 + ABZR87_RS09285 0.84 -0.0 1,964,565 - ABZR87_RS09285 0.84 -0.6 1,964,567 + ABZR87_RS09285 0.84 +0.4 1,964,568 - ABZR87_RS09285 0.84 -0.4 1,964,568 - ABZR87_RS09285 0.84 +0.4 1,964,798 + +0.1 1,964,799 - -0.9 1,964,799 - -0.6 1,964,888 + -0.2 1,967,612 + -0.5 1,967,612 + -0.1 1,967,613 - -0.5 1,967,613 - -0.5 1,967,613 - -0.4 1,967,801 + +0.3 1,967,801 + +0.3 1,967,801 + +0.8 1,967,802 - +2.1 1,967,802 - +0.6 1,967,881 + ABZR87_RS09295 0.11 -1.3 1,967,881 + ABZR87_RS09295 0.11 +0.6 1,967,881 + ABZR87_RS09295 0.11 +1.7 1,967,882 - ABZR87_RS09295 0.11 -0.5 1,967,989 + ABZR87_RS09295 0.17 +0.4 1,968,084 + ABZR87_RS09295 0.22 +0.5 1,968,298 + ABZR87_RS09295 0.33 +0.1 1,968,298 + ABZR87_RS09295 0.33 +0.9 1,968,298 + ABZR87_RS09295 0.33 +0.4 1,968,299 - ABZR87_RS09295 0.34 +0.3 1,968,299 - ABZR87_RS09295 0.34 -0.3 1,968,299 - ABZR87_RS09295 0.34 +0.6 1,968,385 + ABZR87_RS09295 0.38 -1.5 1,968,385 + ABZR87_RS09295 0.38 +0.5 1,968,385 + ABZR87_RS09295 0.38 +0.2 1,968,556 + ABZR87_RS09295 0.48 -0.6 1,968,556 + ABZR87_RS09295 0.48 -0.0 1,968,557 - ABZR87_RS09295 0.48 -0.4 1,968,557 - ABZR87_RS09295 0.48 +0.4
Or see this region's nucleotide sequence