Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07170

Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 2; outgrowth in LB
1,515,354	+		ABZR87_RS07165	0.48	+0.7
1,515,354	+		ABZR87_RS07165	0.48	-0.3
1,515,354	+		ABZR87_RS07165	0.48	+0.2
1,515,355	-		ABZR87_RS07165	0.48	-0.2
1,515,355	-		ABZR87_RS07165	0.48	+1.0
1,515,559	+		ABZR87_RS07165	0.59	+1.4
1,515,559	+		ABZR87_RS07165	0.59	+0.7
1,515,559	+		ABZR87_RS07165	0.59	+2.2
1,515,560	-		ABZR87_RS07165	0.59	+2.3
1,515,560	-		ABZR87_RS07165	0.59	-0.1
1,515,560	-		ABZR87_RS07165	0.59	+1.9
1,515,566	+		ABZR87_RS07165	0.59	-1.3
1,515,567	-		ABZR87_RS07165	0.59	-1.2
1,515,567	-		ABZR87_RS07165	0.59	+0.7
1,515,733	+		ABZR87_RS07165	0.68	+0.2
1,515,733	+		ABZR87_RS07165	0.68	+0.4
1,515,733	+		ABZR87_RS07165	0.68	-0.1
1,515,734	-		ABZR87_RS07165	0.68	-0.2
1,515,816	+		ABZR87_RS07165	0.72	+1.0
1,515,816	+		ABZR87_RS07165	0.72	-1.9
1,515,816	+		ABZR87_RS07165	0.72	-0.0
1,515,816	+		ABZR87_RS07165	0.72	+2.3
1,515,817	-		ABZR87_RS07165	0.72	+0.4
1,515,817	-		ABZR87_RS07165	0.72	+0.0
1,515,817	-		ABZR87_RS07165	0.72	+1.0
1,515,817	-		ABZR87_RS07165	0.72	-0.1
1,515,817	-		ABZR87_RS07165	0.72	+0.8
1,515,852	+		ABZR87_RS07165	0.74	-0.4
1,515,853	-		ABZR87_RS07165	0.74	+0.9
1,515,934	+		ABZR87_RS07165	0.79	+0.3
1,515,935	-		ABZR87_RS07165	0.79	-0.6
1,515,935	-		ABZR87_RS07165	0.79	-0.2
1,515,948	+		ABZR87_RS07165	0.79	+0.4
1,515,948	+		ABZR87_RS07165	0.79	+0.3
1,515,948	+		ABZR87_RS07165	0.79	+1.4
1,515,948	+		ABZR87_RS07165	0.79	+0.8
1,515,948	+		ABZR87_RS07165	0.79	-1.1
1,516,034	+		ABZR87_RS07165	0.84	+0.9
1,516,034	+		ABZR87_RS07165	0.84	-0.0
1,516,034	+		ABZR87_RS07165	0.84	+0.7
1,516,035	-		ABZR87_RS07165	0.84	-0.6
1,516,035	-		ABZR87_RS07165	0.84	+0.3
1,516,035	-		ABZR87_RS07165	0.84	-0.3
1,516,081	+		ABZR87_RS07165	0.86	-0.1
1,516,081	+		ABZR87_RS07165	0.86	-0.3
1,516,081	+		ABZR87_RS07165	0.86	-0.5
1,516,082	-		ABZR87_RS07165	0.87	+0.7
1,516,159	+				+1.2
1,516,159	+				+0.3
1,516,232	+				-0.5
1,516,232	+				-1.6
1,516,233	-				+0.6
1,516,233	-				+2.7
1,516,258	+				+0.7
1,516,258	+				-1.3
1,516,259	-				+1.0
1,516,259	-				-1.2
1,516,259	-				-0.4
1,516,259	-				+0.5
1,516,328	+				-0.2
1,516,328	+				+0.9
1,516,328	+				+0.0
1,516,328	+				+0.5
1,516,328	+				-1.0
1,516,328	+				+0.4
1,516,328	+				+0.1
1,516,328	+				-0.7
1,516,328	+				-0.0
1,516,328	+				-1.7
1,516,328	+				+1.1
1,516,329	-				-0.8
1,516,329	-				+0.2
1,516,329	-				-0.1
1,516,329	-				-0.3
1,516,329	-				+0.2
1,516,329	-				+0.4
1,516,329	-				-0.5
1,516,332	+				-0.3
1,516,332	+				+1.7
1,516,332	+				-0.3
1,516,332	+				+0.1
1,516,332	+				+1.0
1,516,332	+				-0.4
1,516,333	-				-0.5
1,516,333	-				+0.5
1,516,333	-				+0.4
1,516,333	-				+1.5
1,516,333	-				+0.2
1,516,339	+				+0.2
1,516,339	+				-0.5
1,516,339	+				-0.1
1,516,339	+				+0.7
1,516,340	-				-0.3
1,516,340	-				+0.1
1,516,340	-				-0.3
1,516,340	-				+0.1
1,516,340	-				-0.6
1,516,345	+				+1.1
1,516,345	+				-0.1
1,516,346	-				-1.3
1,516,346	-				-3.3
1,516,346	-				-2.1
1,516,374	+				+0.6
1,516,374	+				+0.5
1,516,374	+				+0.8
1,516,374	+				+0.5
1,516,375	-				-2.5
1,516,375	-				-2.6
1,516,375	-				+0.8
1,516,375	-				-1.2
1,516,375	-				-0.3
1,516,503	-		ABZR87_RS07170	0.20	+0.4
1,516,594	+		ABZR87_RS07170	0.31	-0.7
1,516,594	+		ABZR87_RS07170	0.31	+1.6
1,516,595	-		ABZR87_RS07170	0.32	+0.1
1,516,595	-		ABZR87_RS07170	0.32	-0.2
1,516,849	+		ABZR87_RS07170	0.62	+0.5
1,516,849	+		ABZR87_RS07170	0.62	+0.0
1,516,849	+		ABZR87_RS07170	0.62	-0.0
1,516,850	-		ABZR87_RS07170	0.62	+0.1
1,516,916	+		ABZR87_RS07170	0.70	+0.9
1,516,916	+		ABZR87_RS07170	0.70	+0.4
1,516,916	+		ABZR87_RS07170	0.70	+0.5
1,516,917	-		ABZR87_RS07170	0.70	+0.5
1,516,917	-		ABZR87_RS07170	0.70	-0.9
1,516,917	-		ABZR87_RS07170	0.70	-0.7
1,516,917	-		ABZR87_RS07170	0.70	-0.8
1,516,917	-		ABZR87_RS07170	0.70	-0.8
1,516,917	-		ABZR87_RS07170	0.70	-0.1
1,516,917	-		ABZR87_RS07170	0.70	-0.3
1,516,917	-		ABZR87_RS07170	0.70	+0.2
1,517,004	+		ABZR87_RS07170	0.81	+0.7
1,517,004	+		ABZR87_RS07170	0.81	-0.9
1,517,071	+		ABZR87_RS07170	0.89	-0.2
1,517,072	-		ABZR87_RS07170	0.89	+0.5
1,517,072	-		ABZR87_RS07170	0.89	+0.5
1,517,075	-		ABZR87_RS07170	0.89	-1.1
1,517,157	+				-0.8
1,517,157	+				-0.7
1,517,157	+				+0.1
1,517,157	+				-0.4
1,517,157	+				-1.3
1,517,157	+				+1.5
1,517,158	-				+0.3
1,517,172	-				+0.6
1,517,221	+				+0.1
1,517,221	+				+0.5
1,517,221	+				+2.9
1,517,221	+				-0.4
1,517,221	+				+0.1
1,517,221	+				+0.5
1,517,221	+				+0.1
1,517,221	+				+0.8
1,517,221	+				+0.5
1,517,222	-				+0.7
1,517,222	-				+0.8
1,517,222	-				+1.4
1,517,222	-				+1.6
1,517,222	-				-1.5
1,517,222	-				-1.5
1,517,222	-				+0.6
1,517,222	-				+0.4
1,517,222	-				-0.0
1,517,222	-				+0.7
1,517,222	-				-1.8
1,517,233	+				-0.1
1,517,233	+				+2.1
1,517,233	+				-1.0
1,517,233	+				-1.5
1,517,234	-				-2.9
1,517,234	-				+0.0
1,517,234	-				+0.3
1,517,234	-				+0.3
1,517,234	-				-0.1
1,517,234	-				-0.8
1,517,234	-				+0.5
1,517,249	+				+1.1
1,517,259	+				-0.9
1,517,259	+				-0.7
1,517,259	+				+0.1
1,517,260	-				+0.2
1,517,260	-				+0.1
1,517,267	+				-0.5
1,517,268	-				+0.3
1,517,316	+		ABZR87_RS07175	0.12	+0.5
1,517,316	+		ABZR87_RS07175	0.12	+0.0
1,517,317	-		ABZR87_RS07175	0.12	+0.9
1,517,317	-		ABZR87_RS07175	0.12	-2.8
1,517,317	-		ABZR87_RS07175	0.12	-0.6
1,517,318	+		ABZR87_RS07175	0.12	+0.7
1,517,319	-		ABZR87_RS07175	0.13	+0.9
1,517,319	-		ABZR87_RS07175	0.13	+0.0
1,517,336	+		ABZR87_RS07175	0.14	-1.4
1,517,337	-		ABZR87_RS07175	0.14	-0.6
1,517,337	-		ABZR87_RS07175	0.14	+0.4
1,517,375	+		ABZR87_RS07175	0.17	-0.2
1,517,376	-		ABZR87_RS07175	0.17	-0.3
1,517,413	-		ABZR87_RS07175	0.20	+2.5
1,517,413	-		ABZR87_RS07175	0.20	+0.1
1,517,426	+		ABZR87_RS07175	0.21	+0.7
1,517,427	-		ABZR87_RS07175	0.21	+0.3
1,517,427	-		ABZR87_RS07175	0.21	+1.8
1,517,427	-		ABZR87_RS07175	0.21	-1.9
1,517,427	-		ABZR87_RS07175	0.21	-0.0
1,517,434	+		ABZR87_RS07175	0.21	+0.2
1,517,434	+		ABZR87_RS07175	0.21	+0.4
1,517,434	+		ABZR87_RS07175	0.21	-0.4
1,517,434	+		ABZR87_RS07175	0.21	-1.4
1,517,434	+		ABZR87_RS07175	0.21	-1.3
1,517,434	+		ABZR87_RS07175	0.21	-1.1
1,517,434	+		ABZR87_RS07175	0.21	+0.5
1,517,434	+		ABZR87_RS07175	0.21	-1.6
1,517,434	+		ABZR87_RS07175	0.21	+0.1
1,517,434	+		ABZR87_RS07175	0.21	+0.9
1,517,435	-		ABZR87_RS07175	0.22	+0.7
1,517,435	-		ABZR87_RS07175	0.22	-3.5
1,517,435	-		ABZR87_RS07175	0.22	-0.5
1,517,435	-		ABZR87_RS07175	0.22	+0.5
1,517,435	-		ABZR87_RS07175	0.22	-1.9
1,517,435	-		ABZR87_RS07175	0.22	+1.2
1,517,435	-		ABZR87_RS07175	0.22	+0.7
1,517,435	-		ABZR87_RS07175	0.22	+0.4
1,517,435	-		ABZR87_RS07175	0.22	-0.4
1,517,435	-		ABZR87_RS07175	0.22	-0.0
1,517,435	-		ABZR87_RS07175	0.22	-1.0
1,517,435	-		ABZR87_RS07175	0.22	-1.6
1,517,435	-		ABZR87_RS07175	0.22	+1.0
1,517,435	-		ABZR87_RS07175	0.22	+0.4
1,517,435	-		ABZR87_RS07175	0.22	-2.1
1,517,483	+		ABZR87_RS07175	0.25	-0.7
1,517,483	+		ABZR87_RS07175	0.25	+1.5
1,517,483	+		ABZR87_RS07175	0.25	-0.3
1,517,484	-		ABZR87_RS07175	0.25	+0.0
1,517,484	-		ABZR87_RS07175	0.25	-0.1
1,517,562	-		ABZR87_RS07175	0.31	-0.2
1,517,582	+		ABZR87_RS07175	0.33	+0.3
1,517,583	-		ABZR87_RS07175	0.33	-0.9
1,517,583	-		ABZR87_RS07175	0.33	-0.3
1,517,583	-		ABZR87_RS07175	0.33	+0.7
1,517,701	+		ABZR87_RS07175	0.42	+0.3
1,517,701	+		ABZR87_RS07175	0.42	+0.7
1,517,702	-		ABZR87_RS07175	0.42	-0.7
1,517,752	+		ABZR87_RS07175	0.46	+0.2
1,517,753	+		ABZR87_RS07175	0.46	+0.4
1,517,753	+		ABZR87_RS07175	0.46	-0.9
1,517,753	+		ABZR87_RS07175	0.46	+1.2
1,517,753	+		ABZR87_RS07175	0.46	+0.2
1,517,753	+		ABZR87_RS07175	0.46	+0.1
1,517,753	+		ABZR87_RS07175	0.46	+1.2
1,517,753	+		ABZR87_RS07175	0.46	+1.1
1,517,753	+		ABZR87_RS07175	0.46	-0.4
1,517,753	+		ABZR87_RS07175	0.46	+0.5
1,517,753	+		ABZR87_RS07175	0.46	-0.0
1,517,753	+		ABZR87_RS07175	0.46	+0.2
1,517,753	+		ABZR87_RS07175	0.46	+0.1
1,517,753	+		ABZR87_RS07175	0.46	-1.2
1,517,754	-		ABZR87_RS07175	0.46	-0.6
1,517,754	-		ABZR87_RS07175	0.46	+1.0
1,517,754	-		ABZR87_RS07175	0.46	+0.8
1,517,754	-		ABZR87_RS07175	0.46	+0.1
1,517,754	-		ABZR87_RS07175	0.46	+0.3
1,517,754	-		ABZR87_RS07175	0.46	+0.5
1,517,754	-		ABZR87_RS07175	0.46	+0.9
1,517,933	+		ABZR87_RS07175	0.60	+0.4
1,517,934	-		ABZR87_RS07175	0.60	+0.5
1,517,937	+		ABZR87_RS07175	0.61	-0.5
1,517,937	+		ABZR87_RS07175	0.61	+0.5
1,517,937	+		ABZR87_RS07175	0.61	+0.4
1,517,937	+		ABZR87_RS07175	0.61	+0.6
1,517,937	+		ABZR87_RS07175	0.61	+0.3
1,517,937	+		ABZR87_RS07175	0.61	+0.1
1,517,938	-		ABZR87_RS07175	0.61	+0.2
1,517,938	-		ABZR87_RS07175	0.61	-0.4
1,517,938	-		ABZR87_RS07175	0.61	-0.8
1,518,031	+		ABZR87_RS07175	0.68	-2.9
1,518,032	-		ABZR87_RS07175	0.68	+1.7
1,518,032	-		ABZR87_RS07175	0.68	+1.1
1,518,032	-		ABZR87_RS07175	0.68	+0.1
1,518,042	+		ABZR87_RS07175	0.69	-0.2