Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07020

Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 2; outgrowth in LB
1,481,555	+		ABZR87_RS07015	0.20	+2.0
1,481,555	+		ABZR87_RS07015	0.20	-0.7
1,481,555	+		ABZR87_RS07015	0.20	+1.1
1,481,555	+		ABZR87_RS07015	0.20	+1.0
1,481,556	-		ABZR87_RS07015	0.20	-0.7
1,481,556	-		ABZR87_RS07015	0.20	-2.3
1,481,556	-		ABZR87_RS07015	0.20	-0.1
1,481,556	-		ABZR87_RS07015	0.20	-2.5
1,481,556	-		ABZR87_RS07015	0.20	+0.7
1,481,650	+		ABZR87_RS07015	0.31	+0.7
1,481,651	-		ABZR87_RS07015	0.31	-0.6
1,481,706	+		ABZR87_RS07015	0.37	-0.8
1,481,730	+		ABZR87_RS07015	0.40	+0.7
1,481,953	+		ABZR87_RS07015	0.65	+0.8
1,481,953	+		ABZR87_RS07015	0.65	+0.2
1,481,953	+		ABZR87_RS07015	0.65	-0.4
1,481,953	+		ABZR87_RS07015	0.65	-1.9
1,481,953	+		ABZR87_RS07015	0.65	-0.7
1,481,953	+		ABZR87_RS07015	0.65	+0.3
1,481,953	+		ABZR87_RS07015	0.65	+0.2
1,481,953	+		ABZR87_RS07015	0.65	+0.7
1,481,953	+		ABZR87_RS07015	0.65	+0.7
1,481,954	-		ABZR87_RS07015	0.65	+0.4
1,481,954	-		ABZR87_RS07015	0.65	+0.2
1,481,954	-		ABZR87_RS07015	0.65	+0.3
1,481,954	-		ABZR87_RS07015	0.65	+0.2
1,481,954	-		ABZR87_RS07015	0.65	+0.6
1,481,954	-		ABZR87_RS07015	0.65	+0.7
1,481,955	+		ABZR87_RS07015	0.66	-0.3
1,481,957	+		ABZR87_RS07015	0.66	+0.9
1,481,957	+		ABZR87_RS07015	0.66	+0.4
1,481,957	+		ABZR87_RS07015	0.66	+0.3
1,481,957	+		ABZR87_RS07015	0.66	+1.7
1,481,957	+		ABZR87_RS07015	0.66	+0.3
1,481,957	+		ABZR87_RS07015	0.66	-0.9
1,481,957	+		ABZR87_RS07015	0.66	+0.1
1,481,958	-		ABZR87_RS07015	0.66	-0.6
1,481,958	-		ABZR87_RS07015	0.66	+0.6
1,481,958	-		ABZR87_RS07015	0.66	+0.0
1,481,958	-		ABZR87_RS07015	0.66	-0.1
1,481,958	-		ABZR87_RS07015	0.66	-0.3
1,481,958	-		ABZR87_RS07015	0.66	-0.4
1,481,958	-		ABZR87_RS07015	0.66	-1.6
1,481,958	-		ABZR87_RS07015	0.66	-0.4
1,482,029	+		ABZR87_RS07015	0.74	+0.1
1,482,131	+		ABZR87_RS07015	0.86	-0.0
1,482,132	-		ABZR87_RS07015	0.86	+0.4
1,482,132	-		ABZR87_RS07015	0.86	+0.4
1,482,155	+		ABZR87_RS07015	0.88	+0.3
1,482,156	-		ABZR87_RS07015	0.88	-0.1
1,482,233	+				+0.2
1,482,233	+				-0.6
1,482,233	+				-1.5
1,482,234	-				+0.7
1,482,234	-				-0.2
1,482,310	+				+0.8
1,482,310	+				+1.1
1,482,310	+				+0.0
1,482,311	-				-0.6
1,482,311	-				-2.6
1,482,432	+				-0.6
1,482,433	-				+0.4
1,482,433	-				+0.8
1,482,433	-				-0.2
1,482,444	+				+0.2
1,482,444	+				+0.6
1,482,445	-				+0.7
1,482,467	+				+0.7
1,482,467	+				-0.9
1,482,468	-				+3.6
1,482,468	-				+0.9
1,482,478	+				+0.7
1,482,536	+				-0.7
1,482,537	-				+1.5
1,482,537	-				+3.2
1,482,537	-				-0.2
1,482,537	-				-0.2
1,482,537	-				+1.0
1,482,581	+				+0.2
1,482,581	+				+0.8
1,482,581	+				+2.3
1,482,581	+				+2.7
1,482,582	-				+3.2
1,482,582	-				+3.5
1,482,604	-				+4.0
1,482,653	+				+0.6
1,482,653	+				-0.3
1,482,654	-				-0.2
1,482,654	-				+2.7
1,482,654	-				+1.0
1,482,654	-				+2.1
1,482,848	+		ABZR87_RS07020	0.15	+2.3
1,482,848	+		ABZR87_RS07020	0.15	+2.1
1,482,848	+		ABZR87_RS07020	0.15	+1.5
1,482,849	-		ABZR87_RS07020	0.15	+3.2
1,482,849	-		ABZR87_RS07020	0.15	+2.0
1,482,849	-		ABZR87_RS07020	0.15	+2.2
1,482,849	-		ABZR87_RS07020	0.15	+2.5
1,482,861	-		ABZR87_RS07020	0.16	+2.0
1,482,861	-		ABZR87_RS07020	0.16	+3.9
1,483,055	+		ABZR87_RS07020	0.26	+3.3
1,483,055	+		ABZR87_RS07020	0.26	+3.8
1,483,055	+		ABZR87_RS07020	0.26	+1.5
1,483,056	-		ABZR87_RS07020	0.26	+0.9
1,483,056	-		ABZR87_RS07020	0.26	+1.3
1,483,056	-		ABZR87_RS07020	0.26	+1.7
1,483,056	-		ABZR87_RS07020	0.26	-0.2
1,483,056	-		ABZR87_RS07020	0.26	+1.7
1,483,058	-		ABZR87_RS07020	0.26	+1.1
1,483,843	+		ABZR87_RS07020	0.67	+1.7
1,483,843	+		ABZR87_RS07020	0.67	+3.3
1,483,844	-		ABZR87_RS07020	0.67	+2.6
1,483,844	-		ABZR87_RS07020	0.67	+2.3
1,483,844	-		ABZR87_RS07020	0.67	+2.5
1,483,844	-		ABZR87_RS07020	0.67	+1.2
1,483,844	-		ABZR87_RS07020	0.67	+2.3
1,484,024	+		ABZR87_RS07020	0.76	+3.4
1,484,024	+		ABZR87_RS07020	0.76	+1.8
1,484,024	+		ABZR87_RS07020	0.76	+2.9
1,484,024	+		ABZR87_RS07020	0.76	+2.1
1,484,024	+		ABZR87_RS07020	0.76	+1.7
1,484,025	-		ABZR87_RS07020	0.76	+1.8
1,484,025	-		ABZR87_RS07020	0.76	+2.5
1,484,025	-		ABZR87_RS07020	0.76	+2.0
1,484,025	-		ABZR87_RS07020	0.76	+1.4
1,484,025	-		ABZR87_RS07020	0.76	+2.0
1,484,025	-		ABZR87_RS07020	0.76	+2.2
1,484,025	-		ABZR87_RS07020	0.76	+2.0
1,484,025	-		ABZR87_RS07020	0.76	+1.6
1,484,090	+		ABZR87_RS07020	0.79	-0.7
1,484,091	-		ABZR87_RS07020	0.79	+0.4
1,484,357	-				+1.9
1,484,432	+				-0.7
1,484,432	+				-0.2
1,484,432	+				+0.3
1,484,432	+				-0.3
1,484,432	+				+0.3
1,484,433	-				+0.5
1,484,433	-				+0.9
1,484,433	-				-0.7
1,484,544	+				+0.4
1,484,544	+				-0.4
1,484,544	+				+0.0
1,484,545	-				+0.1
1,484,645	-				-0.2
1,484,645	-				+1.0
1,484,802	+		ABZR87_RS07025	0.18	+0.9
1,484,803	-		ABZR87_RS07025	0.18	-0.1
1,484,805	+		ABZR87_RS07025	0.18	+1.3
1,484,805	+		ABZR87_RS07025	0.18	-1.2
1,484,805	+		ABZR87_RS07025	0.18	-2.0
1,484,805	+		ABZR87_RS07025	0.18	-0.6
1,484,805	+		ABZR87_RS07025	0.18	-0.8
1,484,805	+		ABZR87_RS07025	0.18	+0.6
1,484,806	-		ABZR87_RS07025	0.18	-0.0
1,484,806	-		ABZR87_RS07025	0.18	+0.3
1,484,895	+		ABZR87_RS07025	0.26	-0.2
1,484,898	+		ABZR87_RS07025	0.26	+0.3
1,484,899	-		ABZR87_RS07025	0.26	+1.9
1,484,899	-		ABZR87_RS07025	0.26	+0.4
1,484,899	-		ABZR87_RS07025	0.26	-0.6
1,484,899	-		ABZR87_RS07025	0.26	+0.9
1,484,899	-		ABZR87_RS07025	0.26	-0.8
1,484,899	-		ABZR87_RS07025	0.26	-0.2
1,484,899	-		ABZR87_RS07025	0.26	+1.0
1,484,980	+		ABZR87_RS07025	0.34	-2.6
1,484,980	+		ABZR87_RS07025	0.34	-0.2
1,484,980	+		ABZR87_RS07025	0.34	-0.7
1,484,980	+		ABZR87_RS07025	0.34	+0.4
1,484,980	+		ABZR87_RS07025	0.34	-0.1
1,484,980	+		ABZR87_RS07025	0.34	-2.3
1,484,981	-		ABZR87_RS07025	0.34	+2.0
1,485,040	-		ABZR87_RS07025	0.39	-1.2
1,485,040	-		ABZR87_RS07025	0.39	-2.4
1,485,163	+		ABZR87_RS07025	0.49	-0.6
1,485,164	-		ABZR87_RS07025	0.50	-0.0
1,485,193	-		ABZR87_RS07025	0.52	+1.0
1,485,286	+		ABZR87_RS07025	0.60	-0.3
1,485,287	-		ABZR87_RS07025	0.60	-3.1