Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04370 and ABZR87_RS04375 are separated by 102 nucleotides ABZR87_RS04375 and ABZR87_RS04380 are separated by 288 nucleotides
ABZR87_RS04370: ABZR87_RS04370 - inorganic phosphate transporter, at 911,893 to 913,479
_RS04370
ABZR87_RS04375: ABZR87_RS04375 - acylphosphatase, at 913,582 to 913,869
_RS04375
ABZR87_RS04380: ABZR87_RS04380 - ABC transporter permease subunit, at 914,158 to 915,942
_RS04380
Position (kb) 913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 912.797 kb on + strand, within ABZR87_RS04370 at 912.798 kb on - strand, within ABZR87_RS04370 at 912.798 kb on - strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.020 kb on - strand, within ABZR87_RS04370 at 913.020 kb on - strand, within ABZR87_RS04370 at 913.141 kb on + strand, within ABZR87_RS04370 at 913.142 kb on - strand, within ABZR87_RS04370 at 913.226 kb on + strand, within ABZR87_RS04370 at 913.227 kb on - strand, within ABZR87_RS04370 at 913.227 kb on - strand, within ABZR87_RS04370 at 913.309 kb on + strand, within ABZR87_RS04370 at 913.309 kb on + strand, within ABZR87_RS04370 at 913.310 kb on - strand, within ABZR87_RS04370 at 913.379 kb on + strand at 913.379 kb on + strand at 913.419 kb on + strand at 913.419 kb on + strand at 913.420 kb on - strand at 913.420 kb on - strand at 913.517 kb on - strand at 913.517 kb on - strand at 913.517 kb on - strand at 913.536 kb on + strand at 913.536 kb on + strand at 913.536 kb on + strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.837 kb on + strand, within ABZR87_RS04375 at 913.838 kb on - strand, within ABZR87_RS04375 at 913.838 kb on - strand, within ABZR87_RS04375 at 913.838 kb on - strand, within ABZR87_RS04375 at 913.908 kb on + strand at 913.909 kb on - strand at 913.999 kb on + strand at 914.000 kb on - strand at 914.008 kb on + strand at 914.008 kb on + strand at 914.008 kb on + strand at 914.013 kb on + strand at 914.014 kb on - strand at 914.014 kb on - strand at 914.014 kb on - strand at 914.074 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.317 kb on + strand at 914.317 kb on + strand at 914.317 kb on + strand at 914.344 kb on + strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.399 kb on - strand, within ABZR87_RS04380 at 914.399 kb on - strand, within ABZR87_RS04380 at 914.399 kb on - strand, within ABZR87_RS04380 at 914.671 kb on + strand, within ABZR87_RS04380 at 914.671 kb on + strand, within ABZR87_RS04380 at 914.671 kb on + strand, within ABZR87_RS04380 at 914.671 kb on + strand, within ABZR87_RS04380 at 914.672 kb on - strand, within ABZR87_RS04380 at 914.672 kb on - strand, within ABZR87_RS04380
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 912,797 + ABZR87_RS04370 0.57 -0.4 912,798 - ABZR87_RS04370 0.57 -0.0 912,798 - ABZR87_RS04370 0.57 -0.2 913,019 + ABZR87_RS04370 0.71 -1.4 913,019 + ABZR87_RS04370 0.71 +1.4 913,019 + ABZR87_RS04370 0.71 +0.6 913,019 + ABZR87_RS04370 0.71 -3.7 913,019 + ABZR87_RS04370 0.71 -0.1 913,019 + ABZR87_RS04370 0.71 +0.9 913,020 - ABZR87_RS04370 0.71 +0.2 913,020 - ABZR87_RS04370 0.71 -0.3 913,141 + ABZR87_RS04370 0.79 -0.0 913,142 - ABZR87_RS04370 0.79 +0.7 913,226 + ABZR87_RS04370 0.84 -0.0 913,227 - ABZR87_RS04370 0.84 +0.5 913,227 - ABZR87_RS04370 0.84 -2.1 913,309 + ABZR87_RS04370 0.89 +2.2 913,309 + ABZR87_RS04370 0.89 +0.1 913,310 - ABZR87_RS04370 0.89 +0.7 913,379 + +0.8 913,379 + +1.6 913,419 + -0.5 913,419 + +1.1 913,420 - +1.4 913,420 - +0.5 913,517 - +0.0 913,517 - +0.1 913,517 - +0.5 913,536 + -0.2 913,536 + -0.1 913,536 + -0.2 913,537 - -0.6 913,537 - -0.6 913,537 - -0.9 913,537 - -0.5 913,537 - -1.8 913,583 + -0.1 913,583 + -0.3 913,583 + +0.1 913,583 + +0.4 913,583 + +0.1 913,584 - +0.0 913,584 - -0.5 913,584 - -0.6 913,584 - +0.5 913,584 - -0.8 913,584 - +0.3 913,837 + ABZR87_RS04375 0.89 -1.1 913,838 - ABZR87_RS04375 0.89 -3.0 913,838 - ABZR87_RS04375 0.89 -0.9 913,838 - ABZR87_RS04375 0.89 -0.1 913,908 + +0.1 913,909 - +0.3 913,999 + -2.6 914,000 - -2.0 914,008 + -0.9 914,008 + +1.0 914,008 + -0.7 914,013 + -0.6 914,014 - +0.3 914,014 - -0.9 914,014 - -0.5 914,074 + -0.7 914,075 + +0.3 914,075 + -1.0 914,075 + +0.0 914,075 + -1.4 914,075 + -3.1 914,075 + +0.6 914,076 - -0.8 914,076 - -0.1 914,076 - -3.0 914,076 - -0.4 914,076 - -0.2 914,076 - -0.5 914,076 - -0.8 914,076 - -1.0 914,089 + -1.0 914,089 + +0.5 914,089 + +0.7 914,089 + +0.5 914,089 + -1.4 914,089 + +2.3 914,089 + +0.1 914,089 + +0.1 914,090 - +0.6 914,090 - -0.9 914,090 - -1.0 914,090 - -1.7 914,090 - +0.7 914,090 - -0.0 914,090 - +0.5 914,090 - +0.2 914,317 + -0.2 914,317 + +0.1 914,317 + +0.4 914,344 + ABZR87_RS04380 0.10 -0.9 914,396 - ABZR87_RS04380 0.13 +0.8 914,396 - ABZR87_RS04380 0.13 -2.7 914,396 - ABZR87_RS04380 0.13 +0.1 914,396 - ABZR87_RS04380 0.13 -0.4 914,398 + ABZR87_RS04380 0.13 -0.0 914,398 + ABZR87_RS04380 0.13 -0.4 914,398 + ABZR87_RS04380 0.13 -0.1 914,398 + ABZR87_RS04380 0.13 +0.4 914,398 + ABZR87_RS04380 0.13 -2.6 914,399 - ABZR87_RS04380 0.14 -0.7 914,399 - ABZR87_RS04380 0.14 -0.2 914,399 - ABZR87_RS04380 0.14 -0.6 914,671 + ABZR87_RS04380 0.29 -1.6 914,671 + ABZR87_RS04380 0.29 -0.4 914,671 + ABZR87_RS04380 0.29 -0.2 914,671 + ABZR87_RS04380 0.29 +0.3 914,672 - ABZR87_RS04380 0.29 -0.0 914,672 - ABZR87_RS04380 0.29 -0.4
Or see this region's nucleotide sequence