Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03175 and ABZR87_RS03180 are separated by 335 nucleotides ABZR87_RS03180 and ABZR87_RS03185 are separated by 42 nucleotides ABZR87_RS03185 and ABZR87_RS03190 are separated by 272 nucleotides
ABZR87_RS03175: ABZR87_RS03175 - hypothetical protein, at 667,837 to 668,259
_RS03175
ABZR87_RS03180: ABZR87_RS03180 - hypothetical protein, at 668,595 to 668,822
_RS03180
ABZR87_RS03185: ABZR87_RS03185 - hypothetical protein, at 668,865 to 669,074
_RS03185
ABZR87_RS03190: ABZR87_RS03190 - hypothetical protein, at 669,347 to 670,561
_RS03190
Position (kb) 668
669
670 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 668.033 kb on + strand, within ABZR87_RS03175 at 668.033 kb on + strand, within ABZR87_RS03175 at 668.033 kb on + strand, within ABZR87_RS03175 at 668.034 kb on - strand, within ABZR87_RS03175 at 668.034 kb on - strand, within ABZR87_RS03175 at 668.066 kb on + strand, within ABZR87_RS03175 at 668.066 kb on + strand, within ABZR87_RS03175 at 668.066 kb on + strand, within ABZR87_RS03175 at 668.067 kb on - strand, within ABZR87_RS03175 at 668.067 kb on - strand, within ABZR87_RS03175 at 668.067 kb on - strand, within ABZR87_RS03175 at 668.099 kb on + strand, within ABZR87_RS03175 at 668.100 kb on - strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.157 kb on - strand, within ABZR87_RS03175 at 668.225 kb on + strand at 668.226 kb on - strand at 668.226 kb on - strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.416 kb on - strand at 668.416 kb on - strand at 668.426 kb on + strand at 668.426 kb on + strand at 668.480 kb on + strand at 668.480 kb on + strand at 668.481 kb on - strand at 668.518 kb on - strand at 668.583 kb on + strand at 668.596 kb on + strand at 668.596 kb on + strand at 668.596 kb on + strand at 668.596 kb on + strand at 668.597 kb on - strand at 668.597 kb on - strand at 668.597 kb on - strand at 668.674 kb on + strand, within ABZR87_RS03180 at 668.675 kb on - strand, within ABZR87_RS03180 at 668.675 kb on - strand, within ABZR87_RS03180 at 668.815 kb on + strand at 668.815 kb on + strand at 668.866 kb on + strand at 668.866 kb on + strand at 668.867 kb on - strand at 668.867 kb on - strand at 668.924 kb on - strand, within ABZR87_RS03185 at 669.020 kb on + strand, within ABZR87_RS03185 at 669.021 kb on - strand, within ABZR87_RS03185 at 669.021 kb on - strand, within ABZR87_RS03185 at 669.024 kb on + strand, within ABZR87_RS03185 at 669.025 kb on - strand, within ABZR87_RS03185 at 669.025 kb on - strand, within ABZR87_RS03185 at 669.025 kb on - strand, within ABZR87_RS03185 at 669.025 kb on - strand, within ABZR87_RS03185 at 669.025 kb on - strand, within ABZR87_RS03185 at 669.338 kb on + strand at 669.338 kb on + strand at 669.338 kb on + strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.342 kb on + strand at 669.342 kb on + strand at 669.342 kb on + strand at 669.343 kb on - strand at 669.343 kb on - strand at 669.343 kb on - strand at 669.391 kb on + strand at 669.464 kb on + strand at 669.464 kb on + strand at 669.464 kb on + strand at 669.465 kb on - strand at 669.465 kb on - strand at 669.584 kb on + strand, within ABZR87_RS03190 at 669.584 kb on + strand, within ABZR87_RS03190 at 669.584 kb on + strand, within ABZR87_RS03190 at 669.584 kb on + strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.758 kb on + strand, within ABZR87_RS03190 at 669.758 kb on + strand, within ABZR87_RS03190 at 669.758 kb on + strand, within ABZR87_RS03190 at 669.758 kb on + strand, within ABZR87_RS03190 at 669.759 kb on - strand, within ABZR87_RS03190 at 669.759 kb on - strand, within ABZR87_RS03190 at 669.759 kb on - strand, within ABZR87_RS03190 at 669.826 kb on + strand, within ABZR87_RS03190 at 669.827 kb on - strand, within ABZR87_RS03190 at 669.827 kb on - strand, within ABZR87_RS03190 at 669.827 kb on - strand, within ABZR87_RS03190 at 669.827 kb on - strand, within ABZR87_RS03190 at 669.861 kb on - strand, within ABZR87_RS03190 at 669.861 kb on - strand, within ABZR87_RS03190 at 669.861 kb on - strand, within ABZR87_RS03190 at 669.861 kb on - strand, within ABZR87_RS03190 at 669.921 kb on - strand, within ABZR87_RS03190 at 669.932 kb on + strand, within ABZR87_RS03190 at 669.933 kb on - strand, within ABZR87_RS03190 at 669.933 kb on - strand, within ABZR87_RS03190
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 668,033 + ABZR87_RS03175 0.46 +1.2 668,033 + ABZR87_RS03175 0.46 +1.8 668,033 + ABZR87_RS03175 0.46 +0.2 668,034 - ABZR87_RS03175 0.47 +0.6 668,034 - ABZR87_RS03175 0.47 +0.7 668,066 + ABZR87_RS03175 0.54 +0.2 668,066 + ABZR87_RS03175 0.54 +0.1 668,066 + ABZR87_RS03175 0.54 -2.7 668,067 - ABZR87_RS03175 0.54 -0.0 668,067 - ABZR87_RS03175 0.54 -0.4 668,067 - ABZR87_RS03175 0.54 -0.4 668,099 + ABZR87_RS03175 0.62 +3.3 668,100 - ABZR87_RS03175 0.62 -0.5 668,156 + ABZR87_RS03175 0.75 +0.3 668,156 + ABZR87_RS03175 0.75 +0.3 668,156 + ABZR87_RS03175 0.75 -0.7 668,156 + ABZR87_RS03175 0.75 -0.1 668,157 - ABZR87_RS03175 0.76 -0.2 668,225 + +0.3 668,226 - -0.3 668,226 - -0.2 668,246 + +0.3 668,246 + -0.7 668,246 + +0.2 668,246 + -0.1 668,246 + +0.6 668,246 + +1.4 668,246 + -0.2 668,247 - +0.6 668,247 - +1.9 668,247 - +0.3 668,247 - +0.7 668,247 - -0.6 668,247 - -0.5 668,364 + +0.2 668,364 + +0.2 668,364 + -0.5 668,364 + -0.2 668,364 + -1.3 668,365 - -1.1 668,365 - -1.0 668,365 - +0.0 668,365 - +0.2 668,365 - +1.6 668,365 - -1.6 668,365 - +0.5 668,365 - -0.3 668,365 - -1.4 668,415 + +0.1 668,415 + -0.1 668,415 + -1.3 668,415 + +0.3 668,415 + -0.7 668,415 + +0.9 668,416 - -1.3 668,416 - +0.3 668,426 + +0.0 668,426 + +2.0 668,480 + +0.1 668,480 + -2.9 668,481 - +1.2 668,518 - -0.7 668,583 + +0.0 668,596 + -0.1 668,596 + +0.1 668,596 + -0.5 668,596 + -0.5 668,597 - -0.2 668,597 - -0.7 668,597 - +1.4 668,674 + ABZR87_RS03180 0.35 -2.0 668,675 - ABZR87_RS03180 0.35 +0.6 668,675 - ABZR87_RS03180 0.35 +1.2 668,815 + +0.1 668,815 + -0.6 668,866 + -0.3 668,866 + +0.1 668,867 - +0.5 668,867 - +0.1 668,924 - ABZR87_RS03185 0.28 -1.0 669,020 + ABZR87_RS03185 0.74 -1.3 669,021 - ABZR87_RS03185 0.74 +0.2 669,021 - ABZR87_RS03185 0.74 +0.3 669,024 + ABZR87_RS03185 0.76 +0.3 669,025 - ABZR87_RS03185 0.76 -0.1 669,025 - ABZR87_RS03185 0.76 +1.1 669,025 - ABZR87_RS03185 0.76 -0.9 669,025 - ABZR87_RS03185 0.76 +1.0 669,025 - ABZR87_RS03185 0.76 +0.2 669,338 + +0.6 669,338 + +0.0 669,338 + +0.4 669,339 - -0.8 669,339 - -0.4 669,339 - -0.1 669,339 - -0.1 669,339 - -0.8 669,339 - +0.6 669,339 - -0.5 669,339 - -0.3 669,342 + -1.5 669,342 + -1.5 669,342 + +0.7 669,343 - -0.8 669,343 - -0.5 669,343 - -0.5 669,391 + +0.2 669,464 + -0.8 669,464 + -0.4 669,464 + -0.0 669,465 - +0.3 669,465 - +0.1 669,584 + ABZR87_RS03190 0.20 +0.4 669,584 + ABZR87_RS03190 0.20 +0.3 669,584 + ABZR87_RS03190 0.20 -0.2 669,584 + ABZR87_RS03190 0.20 -1.0 669,585 - ABZR87_RS03190 0.20 +0.2 669,585 - ABZR87_RS03190 0.20 +0.3 669,585 - ABZR87_RS03190 0.20 +1.0 669,585 - ABZR87_RS03190 0.20 -0.4 669,585 - ABZR87_RS03190 0.20 +0.1 669,585 - ABZR87_RS03190 0.20 -0.4 669,585 - ABZR87_RS03190 0.20 -0.1 669,585 - ABZR87_RS03190 0.20 +1.2 669,585 - ABZR87_RS03190 0.20 +0.4 669,758 + ABZR87_RS03190 0.34 -0.4 669,758 + ABZR87_RS03190 0.34 +0.9 669,758 + ABZR87_RS03190 0.34 +0.2 669,758 + ABZR87_RS03190 0.34 -0.7 669,759 - ABZR87_RS03190 0.34 -0.6 669,759 - ABZR87_RS03190 0.34 +1.0 669,759 - ABZR87_RS03190 0.34 +0.5 669,826 + ABZR87_RS03190 0.39 -1.6 669,827 - ABZR87_RS03190 0.40 +0.1 669,827 - ABZR87_RS03190 0.40 +0.3 669,827 - ABZR87_RS03190 0.40 +0.6 669,827 - ABZR87_RS03190 0.40 +0.1 669,861 - ABZR87_RS03190 0.42 -0.8 669,861 - ABZR87_RS03190 0.42 +0.4 669,861 - ABZR87_RS03190 0.42 -1.7 669,861 - ABZR87_RS03190 0.42 +0.8 669,921 - ABZR87_RS03190 0.47 +0.7 669,932 + ABZR87_RS03190 0.48 -0.9 669,933 - ABZR87_RS03190 0.48 +0.4 669,933 - ABZR87_RS03190 0.48 -0.1
Or see this region's nucleotide sequence