Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02350 and ABZR87_RS02355 are separated by 572 nucleotides ABZR87_RS02355 and ABZR87_RS02360 are separated by 73 nucleotides ABZR87_RS02360 and ABZR87_RS02365 are separated by 29 nucleotides ABZR87_RS02365 and ABZR87_RS02370 are separated by 72 nucleotides
ABZR87_RS02350: ABZR87_RS02350 - carbohydrate porin, at 503,489 to 504,883
_RS02350
ABZR87_RS02355: ABZR87_RS02355 - hypothetical protein, at 505,456 to 505,680
_RS02355
ABZR87_RS02360: ABZR87_RS02360 - tRNA-Thr, at 505,754 to 505,829
_RS02360
ABZR87_RS02365: ABZR87_RS02365 - ClpXP protease specificity-enhancing factor, at 505,859 to 506,356
_RS02365
ABZR87_RS02370: ABZR87_RS02370 - glutathione S-transferase N-terminal domain-containing protein, at 506,429 to 507,040
_RS02370
Position (kb) 505
506 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 504.858 kb on + strand at 504.858 kb on + strand at 504.858 kb on + strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.859 kb on - strand at 504.916 kb on + strand at 504.916 kb on + strand at 504.917 kb on - strand at 504.983 kb on + strand at 504.984 kb on - strand at 504.984 kb on - strand at 504.984 kb on - strand at 505.010 kb on + strand at 505.010 kb on + strand at 505.010 kb on + strand at 505.010 kb on + strand at 505.011 kb on - strand at 505.011 kb on - strand at 505.052 kb on - strand at 505.098 kb on + strand at 505.128 kb on + strand at 505.129 kb on - strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.158 kb on + strand at 505.159 kb on - strand at 505.162 kb on + strand at 505.162 kb on + strand at 505.162 kb on + strand at 505.163 kb on - strand at 505.163 kb on - strand at 505.179 kb on + strand at 505.180 kb on - strand at 505.180 kb on - strand at 505.285 kb on - strand at 505.334 kb on + strand at 505.350 kb on + strand at 505.350 kb on + strand at 505.351 kb on - strand at 505.351 kb on - strand at 505.616 kb on - strand, within ABZR87_RS02355 at 505.846 kb on - strand at 505.851 kb on - strand at 505.861 kb on - strand at 505.861 kb on - strand at 505.874 kb on + strand at 505.875 kb on - strand at 506.065 kb on + strand, within ABZR87_RS02365 at 506.066 kb on - strand, within ABZR87_RS02365 at 506.066 kb on - strand, within ABZR87_RS02365 at 506.066 kb on - strand, within ABZR87_RS02365 at 506.088 kb on + strand, within ABZR87_RS02365 at 506.088 kb on + strand, within ABZR87_RS02365 at 506.088 kb on + strand, within ABZR87_RS02365 at 506.088 kb on + strand, within ABZR87_RS02365 at 506.088 kb on + strand, within ABZR87_RS02365 at 506.089 kb on - strand, within ABZR87_RS02365 at 506.089 kb on - strand, within ABZR87_RS02365 at 506.089 kb on - strand, within ABZR87_RS02365 at 506.089 kb on - strand, within ABZR87_RS02365 at 506.280 kb on + strand, within ABZR87_RS02365 at 506.280 kb on + strand, within ABZR87_RS02365 at 506.281 kb on - strand, within ABZR87_RS02365 at 506.313 kb on + strand at 506.313 kb on + strand at 506.314 kb on - strand at 506.314 kb on - strand at 506.314 kb on - strand at 506.314 kb on - strand at 506.331 kb on + strand at 506.331 kb on + strand at 506.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 504,858 + +0.2 504,858 + -0.2 504,858 + +0.9 504,859 - -1.1 504,859 - +0.8 504,859 - -0.3 504,859 - -0.0 504,859 - +1.7 504,859 - -0.9 504,916 + -2.4 504,916 + +1.1 504,917 - +1.0 504,983 + -0.2 504,984 - +0.9 504,984 - +0.5 504,984 - -0.5 505,010 + +0.2 505,010 + +0.3 505,010 + -0.2 505,010 + -1.1 505,011 - -0.3 505,011 - +0.6 505,052 - -0.0 505,098 + +1.2 505,128 + -0.1 505,129 - +0.5 505,158 + -0.4 505,158 + +0.5 505,158 + -0.1 505,158 + -1.1 505,158 + -1.0 505,159 - +0.4 505,162 + +0.0 505,162 + -0.1 505,162 + +0.5 505,163 - -0.1 505,163 - +0.2 505,179 + +0.2 505,180 - -0.0 505,180 - +0.7 505,285 - +0.6 505,334 + +0.1 505,350 + -0.6 505,350 + -0.7 505,351 - +0.0 505,351 - +0.1 505,616 - ABZR87_RS02355 0.71 -1.6 505,846 - -0.8 505,851 - +0.0 505,861 - +0.5 505,861 - +0.8 505,874 + +0.7 505,875 - -0.3 506,065 + ABZR87_RS02365 0.41 +0.4 506,066 - ABZR87_RS02365 0.42 +1.3 506,066 - ABZR87_RS02365 0.42 +2.8 506,066 - ABZR87_RS02365 0.42 +0.4 506,088 + ABZR87_RS02365 0.46 +0.8 506,088 + ABZR87_RS02365 0.46 +1.2 506,088 + ABZR87_RS02365 0.46 -0.1 506,088 + ABZR87_RS02365 0.46 +0.9 506,088 + ABZR87_RS02365 0.46 +1.5 506,089 - ABZR87_RS02365 0.46 +1.0 506,089 - ABZR87_RS02365 0.46 +1.0 506,089 - ABZR87_RS02365 0.46 +0.5 506,089 - ABZR87_RS02365 0.46 +0.9 506,280 + ABZR87_RS02365 0.85 +0.5 506,280 + ABZR87_RS02365 0.85 +1.6 506,281 - ABZR87_RS02365 0.85 +0.6 506,313 + +0.9 506,313 + +1.4 506,314 - +0.2 506,314 - +1.6 506,314 - +0.5 506,314 - +0.5 506,331 + +1.1 506,331 + +0.9 506,332 - -0.8
Or see this region's nucleotide sequence