Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01410 and ABZR87_RS01415 are separated by 175 nucleotides ABZR87_RS01415 and ABZR87_RS01420 are separated by 122 nucleotides ABZR87_RS01420 and ABZR87_RS01425 are separated by 152 nucleotides
ABZR87_RS01410: ABZR87_RS01410 - leucine--tRNA ligase, at 294,796 to 297,429
_RS01410
ABZR87_RS01415: ABZR87_RS01415 - 4-hydroxy-tetrahydrodipicolinate reductase, at 297,605 to 298,396
_RS01415
ABZR87_RS01420: ABZR87_RS01420 - outer membrane protein assembly factor BamE, at 298,519 to 299,175
_RS01420
ABZR87_RS01425: ABZR87_RS01425 - ferric iron uptake transcriptional regulator, at 299,328 to 299,759
_RS01425
Position (kb) 297
298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 297.515 kb on - strand at 297.515 kb on - strand at 297.515 kb on - strand at 297.516 kb on + strand at 297.516 kb on + strand at 297.516 kb on + strand at 298.436 kb on + strand at 298.436 kb on + strand at 298.560 kb on + strand at 298.560 kb on + strand at 298.561 kb on - strand at 298.561 kb on - strand at 298.561 kb on - strand at 298.561 kb on - strand at 298.878 kb on - strand, within ABZR87_RS01420 at 298.878 kb on - strand, within ABZR87_RS01420 at 299.060 kb on + strand, within ABZR87_RS01420 at 299.061 kb on - strand, within ABZR87_RS01420 at 299.061 kb on - strand, within ABZR87_RS01420 at 299.207 kb on - strand at 299.212 kb on + strand at 299.261 kb on - strand at 299.308 kb on + strand at 299.308 kb on + strand at 299.308 kb on + strand at 299.309 kb on - strand at 299.309 kb on - strand at 299.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 297,515 - +0.4 297,515 - +0.5 297,515 - -1.3 297,516 + +0.1 297,516 + -1.2 297,516 + +0.4 298,436 + -0.1 298,436 + -3.2 298,560 + +0.5 298,560 + -0.0 298,561 - -1.4 298,561 - +0.0 298,561 - -1.1 298,561 - +0.8 298,878 - ABZR87_RS01420 0.55 +0.4 298,878 - ABZR87_RS01420 0.55 +0.0 299,060 + ABZR87_RS01420 0.82 -0.0 299,061 - ABZR87_RS01420 0.82 +0.6 299,061 - ABZR87_RS01420 0.82 -1.4 299,207 - +1.2 299,212 + +0.1 299,261 - -2.4 299,308 + -0.8 299,308 + -2.6 299,308 + -1.1 299,309 - -0.7 299,309 - -2.1 299,313 + -1.9
Or see this region's nucleotide sequence