Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01370 and ABZR87_RS01375 are separated by 7 nucleotides ABZR87_RS01375 and ABZR87_RS01380 are separated by 82 nucleotides
ABZR87_RS01370: ABZR87_RS01370 - ATP-binding protein, at 286,283 to 287,611
_RS01370
ABZR87_RS01375: ABZR87_RS01375 - two-component system hybrid sensor histidine kinase/response regulator PhcR, at 287,619 to 288,725
_RS01375
ABZR87_RS01380: ABZR87_RS01380 - response regulator, at 288,808 to 289,815
_RS01380
Position (kb) 287
288
289 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10 at 286.625 kb on + strand, within ABZR87_RS01370 at 286.625 kb on + strand, within ABZR87_RS01370 at 286.626 kb on - strand, within ABZR87_RS01370 at 286.626 kb on - strand, within ABZR87_RS01370 at 286.688 kb on + strand, within ABZR87_RS01370 at 286.688 kb on + strand, within ABZR87_RS01370 at 286.688 kb on + strand, within ABZR87_RS01370 at 286.688 kb on + strand, within ABZR87_RS01370 at 286.688 kb on + strand, within ABZR87_RS01370 at 286.689 kb on - strand, within ABZR87_RS01370 at 286.689 kb on - strand, within ABZR87_RS01370 at 286.689 kb on - strand, within ABZR87_RS01370 at 286.689 kb on - strand, within ABZR87_RS01370 at 286.689 kb on - strand, within ABZR87_RS01370 at 286.689 kb on - strand, within ABZR87_RS01370 at 286.689 kb on - strand, within ABZR87_RS01370 at 286.689 kb on - strand, within ABZR87_RS01370 at 286.689 kb on - strand, within ABZR87_RS01370 at 286.689 kb on - strand, within ABZR87_RS01370 at 286.799 kb on + strand, within ABZR87_RS01370 at 286.799 kb on + strand, within ABZR87_RS01370 at 286.799 kb on + strand, within ABZR87_RS01370 at 286.799 kb on + strand, within ABZR87_RS01370 at 286.805 kb on + strand, within ABZR87_RS01370 at 286.805 kb on + strand, within ABZR87_RS01370 at 286.805 kb on + strand, within ABZR87_RS01370 at 286.805 kb on + strand, within ABZR87_RS01370 at 286.806 kb on - strand, within ABZR87_RS01370 at 286.806 kb on - strand, within ABZR87_RS01370 at 286.806 kb on - strand, within ABZR87_RS01370 at 286.806 kb on - strand, within ABZR87_RS01370 at 286.806 kb on - strand, within ABZR87_RS01370 at 286.806 kb on - strand, within ABZR87_RS01370 at 286.806 kb on - strand, within ABZR87_RS01370 at 287.132 kb on + strand, within ABZR87_RS01370 at 287.133 kb on - strand, within ABZR87_RS01370 at 287.295 kb on + strand, within ABZR87_RS01370 at 287.296 kb on - strand, within ABZR87_RS01370 at 287.517 kb on - strand at 287.652 kb on + strand at 287.653 kb on - strand at 287.653 kb on - strand at 287.709 kb on + strand at 287.883 kb on + strand, within ABZR87_RS01375 at 287.883 kb on + strand, within ABZR87_RS01375 at 287.884 kb on - strand, within ABZR87_RS01375 at 287.884 kb on - strand, within ABZR87_RS01375 at 287.884 kb on - strand, within ABZR87_RS01375 at 287.884 kb on - strand, within ABZR87_RS01375 at 287.952 kb on + strand, within ABZR87_RS01375 at 287.953 kb on - strand, within ABZR87_RS01375 at 288.205 kb on - strand, within ABZR87_RS01375 at 288.205 kb on - strand, within ABZR87_RS01375 at 288.253 kb on - strand, within ABZR87_RS01375 at 288.253 kb on - strand, within ABZR87_RS01375 at 288.321 kb on + strand, within ABZR87_RS01375 at 288.321 kb on + strand, within ABZR87_RS01375 at 288.321 kb on + strand, within ABZR87_RS01375 at 288.321 kb on + strand, within ABZR87_RS01375 at 288.322 kb on - strand, within ABZR87_RS01375 at 288.322 kb on - strand, within ABZR87_RS01375 at 288.357 kb on + strand, within ABZR87_RS01375 at 288.741 kb on + strand at 288.741 kb on + strand at 288.742 kb on - strand at 288.742 kb on - strand at 288.742 kb on - strand at 288.793 kb on + strand at 288.793 kb on + strand at 288.794 kb on - strand at 288.844 kb on + strand at 288.844 kb on + strand at 288.844 kb on + strand at 288.845 kb on - strand at 288.874 kb on + strand at 288.874 kb on + strand at 288.874 kb on + strand at 288.874 kb on + strand at 288.875 kb on - strand at 289.028 kb on - strand, within ABZR87_RS01380 at 289.076 kb on - strand, within ABZR87_RS01380 at 289.076 kb on - strand, within ABZR87_RS01380 at 289.129 kb on + strand, within ABZR87_RS01380 at 289.129 kb on + strand, within ABZR87_RS01380 at 289.129 kb on + strand, within ABZR87_RS01380 at 289.130 kb on - strand, within ABZR87_RS01380 at 289.130 kb on - strand, within ABZR87_RS01380 at 289.130 kb on - strand, within ABZR87_RS01380 at 289.131 kb on + strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.292 kb on - strand, within ABZR87_RS01380 at 289.292 kb on - strand, within ABZR87_RS01380 at 289.337 kb on - strand, within ABZR87_RS01380 at 289.337 kb on - strand, within ABZR87_RS01380 at 289.337 kb on - strand, within ABZR87_RS01380 at 289.403 kb on - strand, within ABZR87_RS01380 at 289.403 kb on - strand, within ABZR87_RS01380 at 289.468 kb on + strand, within ABZR87_RS01380 at 289.469 kb on - strand, within ABZR87_RS01380 at 289.469 kb on - strand, within ABZR87_RS01380 at 289.469 kb on - strand, within ABZR87_RS01380 at 289.469 kb on - strand, within ABZR87_RS01380
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 286,625 + ABZR87_RS01370 0.26 +0.3 286,625 + ABZR87_RS01370 0.26 +3.4 286,626 - ABZR87_RS01370 0.26 +6.8 286,626 - ABZR87_RS01370 0.26 +8.2 286,688 + ABZR87_RS01370 0.30 +2.2 286,688 + ABZR87_RS01370 0.30 +1.7 286,688 + ABZR87_RS01370 0.30 +0.8 286,688 + ABZR87_RS01370 0.30 +0.1 286,688 + ABZR87_RS01370 0.30 +0.0 286,689 - ABZR87_RS01370 0.31 +8.5 286,689 - ABZR87_RS01370 0.31 +7.9 286,689 - ABZR87_RS01370 0.31 +7.5 286,689 - ABZR87_RS01370 0.31 +8.0 286,689 - ABZR87_RS01370 0.31 +8.8 286,689 - ABZR87_RS01370 0.31 +7.8 286,689 - ABZR87_RS01370 0.31 +8.1 286,689 - ABZR87_RS01370 0.31 +8.7 286,689 - ABZR87_RS01370 0.31 +7.9 286,689 - ABZR87_RS01370 0.31 +8.3 286,799 + ABZR87_RS01370 0.39 -0.4 286,799 + ABZR87_RS01370 0.39 +1.3 286,799 + ABZR87_RS01370 0.39 +0.7 286,799 + ABZR87_RS01370 0.39 +0.0 286,805 + ABZR87_RS01370 0.39 -0.2 286,805 + ABZR87_RS01370 0.39 +0.8 286,805 + ABZR87_RS01370 0.39 +0.1 286,805 + ABZR87_RS01370 0.39 +0.9 286,806 - ABZR87_RS01370 0.39 +10.0 286,806 - ABZR87_RS01370 0.39 +8.3 286,806 - ABZR87_RS01370 0.39 +9.3 286,806 - ABZR87_RS01370 0.39 +10.0 286,806 - ABZR87_RS01370 0.39 +8.6 286,806 - ABZR87_RS01370 0.39 +8.0 286,806 - ABZR87_RS01370 0.39 +9.3 287,132 + ABZR87_RS01370 0.64 -1.2 287,133 - ABZR87_RS01370 0.64 +5.3 287,295 + ABZR87_RS01370 0.76 -0.2 287,296 - ABZR87_RS01370 0.76 +0.7 287,517 - +3.2 287,652 + +10.3 287,653 - +8.6 287,653 - +9.1 287,709 + +8.8 287,883 + ABZR87_RS01375 0.24 +9.0 287,883 + ABZR87_RS01375 0.24 +8.9 287,884 - ABZR87_RS01375 0.24 +9.5 287,884 - ABZR87_RS01375 0.24 +9.3 287,884 - ABZR87_RS01375 0.24 +9.7 287,884 - ABZR87_RS01375 0.24 +9.3 287,952 + ABZR87_RS01375 0.30 +8.7 287,953 - ABZR87_RS01375 0.30 +9.5 288,205 - ABZR87_RS01375 0.53 +10.2 288,205 - ABZR87_RS01375 0.53 +9.4 288,253 - ABZR87_RS01375 0.57 +9.7 288,253 - ABZR87_RS01375 0.57 +9.6 288,321 + ABZR87_RS01375 0.63 +8.5 288,321 + ABZR87_RS01375 0.63 +10.3 288,321 + ABZR87_RS01375 0.63 +9.6 288,321 + ABZR87_RS01375 0.63 +9.1 288,322 - ABZR87_RS01375 0.64 +9.7 288,322 - ABZR87_RS01375 0.64 +8.8 288,357 + ABZR87_RS01375 0.67 +9.1 288,741 + +0.1 288,741 + +1.0 288,742 - +2.6 288,742 - +1.7 288,742 - +0.4 288,793 + -0.7 288,793 + +0.3 288,794 - +0.7 288,844 + +0.2 288,844 + -2.2 288,844 + +1.2 288,845 - -0.5 288,874 + +0.1 288,874 + -1.2 288,874 + +0.1 288,874 + +0.6 288,875 - -0.5 289,028 - ABZR87_RS01380 0.22 -0.8 289,076 - ABZR87_RS01380 0.27 +1.3 289,076 - ABZR87_RS01380 0.27 +0.9 289,129 + ABZR87_RS01380 0.32 +0.6 289,129 + ABZR87_RS01380 0.32 +1.0 289,129 + ABZR87_RS01380 0.32 +0.4 289,130 - ABZR87_RS01380 0.32 +0.2 289,130 - ABZR87_RS01380 0.32 +0.7 289,130 - ABZR87_RS01380 0.32 +0.1 289,131 + ABZR87_RS01380 0.32 -0.5 289,132 - ABZR87_RS01380 0.32 +0.4 289,132 - ABZR87_RS01380 0.32 +0.0 289,132 - ABZR87_RS01380 0.32 +0.4 289,132 - ABZR87_RS01380 0.32 -0.2 289,132 - ABZR87_RS01380 0.32 +1.3 289,132 - ABZR87_RS01380 0.32 +0.6 289,132 - ABZR87_RS01380 0.32 -0.0 289,292 - ABZR87_RS01380 0.48 +0.1 289,292 - ABZR87_RS01380 0.48 +0.6 289,337 - ABZR87_RS01380 0.52 +0.9 289,337 - ABZR87_RS01380 0.52 +0.7 289,337 - ABZR87_RS01380 0.52 +0.0 289,403 - ABZR87_RS01380 0.59 +0.6 289,403 - ABZR87_RS01380 0.59 -0.8 289,468 + ABZR87_RS01380 0.65 +1.3 289,469 - ABZR87_RS01380 0.66 -0.8 289,469 - ABZR87_RS01380 0.66 +0.9 289,469 - ABZR87_RS01380 0.66 +0.8 289,469 - ABZR87_RS01380 0.66 -1.0
Or see this region's nucleotide sequence