Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01220 and ABZR87_RS01225 are separated by 122 nucleotides ABZR87_RS01225 and ABZR87_RS01230 are separated by 30 nucleotides ABZR87_RS01230 and ABZR87_RS01235 are separated by 527 nucleotides
ABZR87_RS01220: ABZR87_RS01220 - type IV pilus twitching motility protein PilT, at 252,282 to 253,325
_RS01220
ABZR87_RS01225: ABZR87_RS01225 - YggS family pyridoxal phosphate-dependent enzyme, at 253,448 to 254,164
_RS01225
ABZR87_RS01230: ABZR87_RS01230 - pyrroline-5-carboxylate reductase, at 254,195 to 255,019
_RS01230
ABZR87_RS01235: ABZR87_RS01235 - 4-hydroxybenzoate octaprenyltransferase, at 255,547 to 256,422
_RS01235
Position (kb) 254
255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 253.328 kb on + strand at 253.328 kb on + strand at 253.328 kb on + strand at 253.329 kb on - strand at 253.329 kb on - strand at 253.329 kb on - strand at 253.329 kb on - strand at 253.329 kb on - strand at 253.329 kb on - strand at 253.330 kb on + strand at 253.330 kb on + strand at 253.330 kb on + strand at 253.331 kb on - strand at 253.331 kb on - strand at 253.331 kb on - strand at 253.331 kb on - strand at 253.349 kb on + strand at 253.350 kb on - strand at 253.350 kb on - strand at 253.423 kb on + strand at 253.423 kb on + strand at 253.423 kb on + strand at 253.424 kb on - strand at 253.424 kb on - strand at 253.424 kb on - strand at 253.424 kb on - strand at 253.430 kb on - strand at 253.447 kb on + strand at 253.447 kb on + strand at 253.447 kb on + strand at 253.447 kb on + strand at 253.448 kb on - strand at 253.448 kb on - strand at 253.448 kb on - strand at 253.448 kb on - strand at 253.455 kb on + strand at 253.456 kb on - strand at 253.619 kb on + strand, within ABZR87_RS01225 at 253.619 kb on + strand, within ABZR87_RS01225 at 253.620 kb on - strand, within ABZR87_RS01225 at 253.620 kb on - strand, within ABZR87_RS01225 at 254.053 kb on + strand, within ABZR87_RS01225 at 254.053 kb on + strand, within ABZR87_RS01225 at 255.500 kb on + strand at 255.548 kb on + strand at 255.560 kb on + strand at 255.560 kb on + strand at 255.560 kb on + strand at 255.560 kb on + strand at 255.561 kb on - strand at 255.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 253,328 + +5.5 253,328 + +4.4 253,328 + +5.8 253,329 - +2.5 253,329 - +0.1 253,329 - +1.9 253,329 - +1.3 253,329 - +1.8 253,329 - +0.2 253,330 + +5.2 253,330 + +5.4 253,330 + +4.8 253,331 - +0.7 253,331 - +0.5 253,331 - -0.2 253,331 - +0.2 253,349 + +1.8 253,350 - -3.4 253,350 - +0.8 253,423 + +1.2 253,423 + +0.7 253,423 + +0.3 253,424 - +0.6 253,424 - +0.3 253,424 - +1.0 253,424 - +0.0 253,430 - +0.7 253,447 + +0.1 253,447 + +1.3 253,447 + +2.8 253,447 + +0.7 253,448 - -0.6 253,448 - -0.0 253,448 - -0.8 253,448 - +0.4 253,455 + -0.0 253,456 - -0.4 253,619 + ABZR87_RS01225 0.24 -2.9 253,619 + ABZR87_RS01225 0.24 -1.7 253,620 - ABZR87_RS01225 0.24 -2.6 253,620 - ABZR87_RS01225 0.24 -2.8 254,053 + ABZR87_RS01225 0.84 -1.6 254,053 + ABZR87_RS01225 0.84 -2.8 255,500 + +0.8 255,548 + +0.2 255,560 + +0.4 255,560 + +0.1 255,560 + -1.0 255,560 + +0.2 255,561 - -0.5 255,561 - -1.6
Or see this region's nucleotide sequence