Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00475

Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00465 and ABZR87_RS00470 are separated by 278 nucleotidesABZR87_RS00470 and ABZR87_RS00475 are separated by 187 nucleotidesABZR87_RS00475 and ABZR87_RS00480 overlap by 4 nucleotides ABZR87_RS00465: ABZR87_RS00465 - sorbitol dehydrogenase family protein, at 96,723 to 97,205 _RS00465 ABZR87_RS00470: ABZR87_RS00470 - hypothetical protein, at 97,484 to 97,693 _RS00470 ABZR87_RS00475: ABZR87_RS00475 - metallophosphoesterase, at 97,881 to 99,395 _RS00475 ABZR87_RS00480: ABZR87_RS00480 - cytochrome-c peroxidase, at 99,392 to 100,723 _RS00480 Position (kb) 97 98 99 100Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 97.422 kb on + strandat 97.440 kb on + strandat 97.455 kb on + strandat 97.455 kb on + strandat 97.456 kb on - strandat 97.469 kb on - strandat 97.470 kb on + strandat 97.471 kb on - strandat 97.691 kb on + strandat 97.691 kb on + strandat 97.691 kb on + strandat 97.691 kb on + strandat 97.691 kb on + strandat 97.692 kb on - strandat 97.692 kb on - strandat 97.692 kb on - strandat 97.692 kb on - strandat 97.692 kb on - strandat 97.692 kb on - strandat 97.692 kb on - strandat 97.692 kb on - strandat 97.692 kb on - strandat 97.749 kb on + strandat 97.749 kb on + strandat 97.749 kb on + strandat 97.749 kb on + strandat 97.749 kb on + strandat 97.749 kb on + strandat 97.750 kb on - strandat 97.750 kb on - strandat 97.750 kb on - strandat 97.750 kb on - strandat 97.750 kb on - strandat 97.750 kb on - strandat 97.750 kb on - strandat 97.750 kb on - strandat 97.821 kb on + strandat 97.822 kb on - strandat 97.840 kb on + strandat 97.841 kb on - strandat 97.841 kb on - strandat 97.841 kb on - strandat 98.118 kb on + strand, within ABZR87_RS00475at 98.118 kb on + strand, within ABZR87_RS00475at 98.119 kb on - strand, within ABZR87_RS00475at 98.119 kb on - strand, within ABZR87_RS00475at 98.119 kb on - strand, within ABZR87_RS00475at 98.119 kb on - strand, within ABZR87_RS00475at 98.119 kb on - strand, within ABZR87_RS00475at 98.119 kb on - strand, within ABZR87_RS00475at 98.119 kb on - strand, within ABZR87_RS00475at 98.120 kb on + strand, within ABZR87_RS00475at 98.120 kb on + strand, within ABZR87_RS00475at 98.121 kb on - strand, within ABZR87_RS00475at 98.121 kb on - strand, within ABZR87_RS00475at 98.121 kb on - strand, within ABZR87_RS00475at 98.514 kb on + strand, within ABZR87_RS00475at 98.514 kb on + strand, within ABZR87_RS00475at 98.515 kb on - strand, within ABZR87_RS00475at 98.578 kb on - strand, within ABZR87_RS00475at 98.588 kb on + strand, within ABZR87_RS00475at 98.589 kb on - strand, within ABZR87_RS00475at 98.589 kb on - strand, within ABZR87_RS00475at 98.784 kb on + strand, within ABZR87_RS00475at 98.785 kb on - strand, within ABZR87_RS00475at 98.785 kb on - strand, within ABZR87_RS00475at 98.808 kb on - strand, within ABZR87_RS00475at 98.808 kb on - strand, within ABZR87_RS00475at 98.883 kb on + strand, within ABZR87_RS00475at 98.883 kb on + strand, within ABZR87_RS00475at 98.884 kb on - strand, within ABZR87_RS00475at 98.884 kb on - strand, within ABZR87_RS00475at 98.945 kb on + strand, within ABZR87_RS00475at 98.946 kb on - strand, within ABZR87_RS00475at 99.051 kb on + strand, within ABZR87_RS00475at 99.051 kb on + strand, within ABZR87_RS00475at 99.051 kb on + strand, within ABZR87_RS00475at 99.051 kb on + strand, within ABZR87_RS00475at 99.051 kb on + strand, within ABZR87_RS00475at 99.052 kb on - strand, within ABZR87_RS00475at 99.052 kb on - strand, within ABZR87_RS00475at 99.052 kb on - strand, within ABZR87_RS00475at 99.052 kb on - strand, within ABZR87_RS00475at 99.052 kb on - strand, within ABZR87_RS00475at 99.052 kb on - strand, within ABZR87_RS00475at 99.052 kb on - strand, within ABZR87_RS00475at 99.309 kb on + strandat 99.309 kb on + strandat 99.309 kb on + strandat 99.310 kb on - strandat 99.310 kb on - strandat 99.310 kb on - strandat 99.310 kb on - strandat 99.310 kb on - strandat 99.310 kb on - strandat 99.722 kb on + strand, within ABZR87_RS00480at 99.722 kb on + strand, within ABZR87_RS00480at 99.722 kb on + strand, within ABZR87_RS00480at 99.731 kb on + strand, within ABZR87_RS00480at 99.731 kb on + strand, within ABZR87_RS00480at 99.731 kb on + strand, within ABZR87_RS00480at 99.731 kb on + strand, within ABZR87_RS00480at 99.731 kb on + strand, within ABZR87_RS00480at 99.731 kb on + strand, within ABZR87_RS00480at 99.731 kb on + strand, within ABZR87_RS00480at 99.731 kb on + strand, within ABZR87_RS00480at 99.732 kb on - strand, within ABZR87_RS00480at 99.746 kb on + strand, within ABZR87_RS00480at 99.747 kb on - strand, within ABZR87_RS00480at 100.005 kb on - strand, within ABZR87_RS00480at 100.005 kb on - strand, within ABZR87_RS00480at 100.005 kb on - strand, within ABZR87_RS00480at 100.200 kb on - strand, within ABZR87_RS00480

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB
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97,422 + -0.2
97,440 + -0.4
97,455 + +0.1
97,455 + -0.5
97,456 - -0.7
97,469 - +0.4
97,470 + +0.8
97,471 - -0.0
97,691 + +0.6
97,691 + -1.0
97,691 + -0.6
97,691 + +0.5
97,691 + -0.3
97,692 - +0.2
97,692 - +0.0
97,692 - +1.6
97,692 - -0.5
97,692 - -1.0
97,692 - +0.8
97,692 - -1.8
97,692 - -1.4
97,692 - -0.3
97,749 + -2.1
97,749 + +0.8
97,749 + -1.0
97,749 + -0.9
97,749 + +0.5
97,749 + -0.2
97,750 - -0.2
97,750 - +1.0
97,750 - +0.4
97,750 - +0.5
97,750 - -0.5
97,750 - -0.0
97,750 - -0.5
97,750 - +0.6
97,821 + -1.2
97,822 - -1.6
97,840 + -1.3
97,841 - +0.8
97,841 - +0.5
97,841 - +1.0
98,118 + ABZR87_RS00475 0.16 -2.1
98,118 + ABZR87_RS00475 0.16 +0.3
98,119 - ABZR87_RS00475 0.16 +0.2
98,119 - ABZR87_RS00475 0.16 +0.7
98,119 - ABZR87_RS00475 0.16 +0.2
98,119 - ABZR87_RS00475 0.16 +0.2
98,119 - ABZR87_RS00475 0.16 +0.6
98,119 - ABZR87_RS00475 0.16 -2.5
98,119 - ABZR87_RS00475 0.16 -0.1
98,120 + ABZR87_RS00475 0.16 +0.7
98,120 + ABZR87_RS00475 0.16 -0.7
98,121 - ABZR87_RS00475 0.16 -0.7
98,121 - ABZR87_RS00475 0.16 +0.6
98,121 - ABZR87_RS00475 0.16 -0.2
98,514 + ABZR87_RS00475 0.42 +0.4
98,514 + ABZR87_RS00475 0.42 +1.6
98,515 - ABZR87_RS00475 0.42 +0.3
98,578 - ABZR87_RS00475 0.46 -0.1
98,588 + ABZR87_RS00475 0.47 +0.2
98,589 - ABZR87_RS00475 0.47 +0.9
98,589 - ABZR87_RS00475 0.47 -0.5
98,784 + ABZR87_RS00475 0.60 +0.1
98,785 - ABZR87_RS00475 0.60 +0.4
98,785 - ABZR87_RS00475 0.60 -0.1
98,808 - ABZR87_RS00475 0.61 +0.7
98,808 - ABZR87_RS00475 0.61 +0.5
98,883 + ABZR87_RS00475 0.66 -0.8
98,883 + ABZR87_RS00475 0.66 +0.0
98,884 - ABZR87_RS00475 0.66 -0.5
98,884 - ABZR87_RS00475 0.66 +0.9
98,945 + ABZR87_RS00475 0.70 +0.6
98,946 - ABZR87_RS00475 0.70 +1.2
99,051 + ABZR87_RS00475 0.77 -1.6
99,051 + ABZR87_RS00475 0.77 -0.1
99,051 + ABZR87_RS00475 0.77 -0.9
99,051 + ABZR87_RS00475 0.77 -0.5
99,051 + ABZR87_RS00475 0.77 +1.3
99,052 - ABZR87_RS00475 0.77 -0.7
99,052 - ABZR87_RS00475 0.77 -0.3
99,052 - ABZR87_RS00475 0.77 -0.1
99,052 - ABZR87_RS00475 0.77 +1.2
99,052 - ABZR87_RS00475 0.77 +0.9
99,052 - ABZR87_RS00475 0.77 +0.5
99,052 - ABZR87_RS00475 0.77 +0.8
99,309 + -3.8
99,309 + +0.2
99,309 + +0.1
99,310 - -0.7
99,310 - -1.1
99,310 - +1.4
99,310 - +0.4
99,310 - -1.3
99,310 - -0.8
99,722 + ABZR87_RS00480 0.25 -0.8
99,722 + ABZR87_RS00480 0.25 +0.1
99,722 + ABZR87_RS00480 0.25 -0.5
99,731 + ABZR87_RS00480 0.25 -0.8
99,731 + ABZR87_RS00480 0.25 -1.7
99,731 + ABZR87_RS00480 0.25 +0.5
99,731 + ABZR87_RS00480 0.25 +0.3
99,731 + ABZR87_RS00480 0.25 +0.2
99,731 + ABZR87_RS00480 0.25 -0.4
99,731 + ABZR87_RS00480 0.25 -0.1
99,731 + ABZR87_RS00480 0.25 -0.2
99,732 - ABZR87_RS00480 0.26 +0.8
99,746 + ABZR87_RS00480 0.27 -0.4
99,747 - ABZR87_RS00480 0.27 +0.3
100,005 - ABZR87_RS00480 0.46 -0.6
100,005 - ABZR87_RS00480 0.46 -2.5
100,005 - ABZR87_RS00480 0.46 -1.5
100,200 - ABZR87_RS00480 0.61 -0.3

Or see this region's nucleotide sequence