Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00420 and ABZR87_RS00425 overlap by 4 nucleotides ABZR87_RS00425 and ABZR87_RS00430 overlap by 4 nucleotides ABZR87_RS00430 and ABZR87_RS00435 are separated by 70 nucleotides
ABZR87_RS00420: ABZR87_RS00420 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 86,950 to 88,155
_RS00420
ABZR87_RS00425: ABZR87_RS00425 - LLM class flavin-dependent oxidoreductase, at 88,152 to 89,198
_RS00425
ABZR87_RS00430: ABZR87_RS00430 - dUTP diphosphatase, at 89,195 to 89,641
_RS00430
ABZR87_RS00435: ABZR87_RS00435 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 89,712 to 92,000
_RS00435
Position (kb) 88
89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 88.203 kb on + strand at 88.203 kb on + strand at 88.204 kb on - strand at 88.204 kb on - strand at 88.282 kb on - strand, within ABZR87_RS00425 at 88.372 kb on + strand, within ABZR87_RS00425 at 88.372 kb on + strand, within ABZR87_RS00425 at 88.372 kb on + strand, within ABZR87_RS00425 at 88.372 kb on + strand, within ABZR87_RS00425 at 88.373 kb on - strand, within ABZR87_RS00425 at 88.373 kb on - strand, within ABZR87_RS00425 at 88.373 kb on - strand, within ABZR87_RS00425 at 88.404 kb on + strand, within ABZR87_RS00425 at 88.404 kb on + strand, within ABZR87_RS00425 at 88.407 kb on + strand, within ABZR87_RS00425 at 88.407 kb on + strand, within ABZR87_RS00425 at 88.407 kb on + strand, within ABZR87_RS00425 at 88.408 kb on - strand, within ABZR87_RS00425 at 88.408 kb on - strand, within ABZR87_RS00425 at 88.408 kb on - strand, within ABZR87_RS00425 at 88.509 kb on - strand, within ABZR87_RS00425 at 88.536 kb on + strand, within ABZR87_RS00425 at 88.536 kb on + strand, within ABZR87_RS00425 at 88.536 kb on + strand, within ABZR87_RS00425 at 88.537 kb on - strand, within ABZR87_RS00425 at 88.537 kb on - strand, within ABZR87_RS00425 at 88.537 kb on - strand, within ABZR87_RS00425 at 88.621 kb on - strand, within ABZR87_RS00425 at 88.776 kb on + strand, within ABZR87_RS00425 at 88.777 kb on - strand, within ABZR87_RS00425 at 88.801 kb on - strand, within ABZR87_RS00425 at 88.815 kb on + strand, within ABZR87_RS00425 at 88.815 kb on + strand, within ABZR87_RS00425 at 88.816 kb on - strand, within ABZR87_RS00425 at 88.816 kb on - strand, within ABZR87_RS00425 at 88.962 kb on + strand, within ABZR87_RS00425 at 88.962 kb on + strand, within ABZR87_RS00425 at 88.962 kb on + strand, within ABZR87_RS00425 at 88.963 kb on - strand, within ABZR87_RS00425 at 88.963 kb on - strand, within ABZR87_RS00425 at 89.106 kb on + strand at 89.107 kb on - strand at 89.128 kb on - strand at 89.659 kb on - strand at 90.137 kb on + strand, within ABZR87_RS00435 at 90.138 kb on - strand, within ABZR87_RS00435 at 90.138 kb on - strand, within ABZR87_RS00435
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 88,203 + +0.5 88,203 + -0.3 88,204 - -0.8 88,204 - +0.8 88,282 - ABZR87_RS00425 0.12 +0.7 88,372 + ABZR87_RS00425 0.21 +0.8 88,372 + ABZR87_RS00425 0.21 -0.5 88,372 + ABZR87_RS00425 0.21 +0.8 88,372 + ABZR87_RS00425 0.21 +0.5 88,373 - ABZR87_RS00425 0.21 +0.6 88,373 - ABZR87_RS00425 0.21 +0.5 88,373 - ABZR87_RS00425 0.21 +0.2 88,404 + ABZR87_RS00425 0.24 +1.5 88,404 + ABZR87_RS00425 0.24 +0.7 88,407 + ABZR87_RS00425 0.24 +1.1 88,407 + ABZR87_RS00425 0.24 -0.3 88,407 + ABZR87_RS00425 0.24 +1.5 88,408 - ABZR87_RS00425 0.24 -1.0 88,408 - ABZR87_RS00425 0.24 +1.2 88,408 - ABZR87_RS00425 0.24 -0.2 88,509 - ABZR87_RS00425 0.34 -0.9 88,536 + ABZR87_RS00425 0.37 +1.6 88,536 + ABZR87_RS00425 0.37 -0.2 88,536 + ABZR87_RS00425 0.37 -0.2 88,537 - ABZR87_RS00425 0.37 -0.7 88,537 - ABZR87_RS00425 0.37 +0.3 88,537 - ABZR87_RS00425 0.37 -0.0 88,621 - ABZR87_RS00425 0.45 +0.0 88,776 + ABZR87_RS00425 0.60 -0.2 88,777 - ABZR87_RS00425 0.60 -2.0 88,801 - ABZR87_RS00425 0.62 -1.1 88,815 + ABZR87_RS00425 0.63 -1.4 88,815 + ABZR87_RS00425 0.63 -0.6 88,816 - ABZR87_RS00425 0.63 +0.2 88,816 - ABZR87_RS00425 0.63 -1.9 88,962 + ABZR87_RS00425 0.77 +0.9 88,962 + ABZR87_RS00425 0.77 +0.5 88,962 + ABZR87_RS00425 0.77 -0.3 88,963 - ABZR87_RS00425 0.77 +1.2 88,963 - ABZR87_RS00425 0.77 -1.5 89,106 + -0.3 89,107 - +0.2 89,128 - -0.0 89,659 - +1.4 90,137 + ABZR87_RS00435 0.19 -2.7 90,138 - ABZR87_RS00435 0.19 +0.2 90,138 - ABZR87_RS00435 0.19 -3.3
Or see this region's nucleotide sequence