Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3084

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3083 and DvMF_3084 are separated by 399 nucleotidesDvMF_3084 and DvMF_3085 are separated by 19 nucleotidesDvMF_3085 and DvMF_3086 are separated by 146 nucleotides DvMF_3083: DvMF_3083 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 3,891,763 to 3,894,993 _3083 DvMF_3084: DvMF_3084 - ATP-dependent protease La (RefSeq), at 3,895,393 to 3,898,089 _3084 DvMF_3085: DvMF_3085 - acylphosphatase (RefSeq), at 3,898,109 to 3,898,447 _3085 DvMF_3086: DvMF_3086 - DNA repair protein RadC (RefSeq), at 3,898,594 to 3,899,271 _3086 Position (kb) 3895 3896 3897 3898 3899Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3894.453 kb on + strand, within DvMF_3083at 3894.531 kb on - strand, within DvMF_3083at 3895.067 kb on + strandat 3895.202 kb on + strandat 3898.366 kb on + strand, within DvMF_3085at 3898.818 kb on - strand, within DvMF_3086at 3898.889 kb on + strand, within DvMF_3086at 3898.957 kb on + strand, within DvMF_3086at 3898.957 kb on + strand, within DvMF_3086at 3898.965 kb on - strand, within DvMF_3086at 3899.043 kb on + strand, within DvMF_3086

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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3,894,453 + DvMF_3083 0.83 -1.0
3,894,531 - DvMF_3083 0.86 -1.0
3,895,067 + +1.4
3,895,202 + -0.1
3,898,366 + DvMF_3085 0.76 -1.8
3,898,818 - DvMF_3086 0.33 -4.2
3,898,889 + DvMF_3086 0.44 -3.3
3,898,957 + DvMF_3086 0.54 -1.3
3,898,957 + DvMF_3086 0.54 -0.0
3,898,965 - DvMF_3086 0.55 -1.0
3,899,043 + DvMF_3086 0.66 -3.5

Or see this region's nucleotide sequence