Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3025

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3023 and DvMF_3024 are separated by 9 nucleotidesDvMF_3024 and DvMF_3025 are separated by 310 nucleotidesDvMF_3025 and DvMF_3026 are separated by 134 nucleotides DvMF_3023: DvMF_3023 - ammonium transporter (RefSeq), at 3,816,895 to 3,818,472 _3023 DvMF_3024: DvMF_3024 - nitrogen regulatory protein P-II (RefSeq), at 3,818,482 to 3,818,820 _3024 DvMF_3025: DvMF_3025 - xanthine-guanine phosphoribosyltransferase (RefSeq), at 3,819,131 to 3,819,622 _3025 DvMF_3026: DvMF_3026 - basic membrane lipoprotein (RefSeq), at 3,819,757 to 3,820,899 _3026 Position (kb) 3819 3820Strain fitness (log2 ratio) -2 -1 0 1at 3818.197 kb on - strand, within DvMF_3023at 3818.224 kb on + strand, within DvMF_3023at 3818.232 kb on - strand, within DvMF_3023at 3818.288 kb on - strand, within DvMF_3023at 3818.317 kb on + strandat 3818.546 kb on + strand, within DvMF_3024at 3818.546 kb on + strand, within DvMF_3024at 3818.546 kb on + strand, within DvMF_3024at 3818.554 kb on - strand, within DvMF_3024at 3818.554 kb on - strand, within DvMF_3024at 3818.554 kb on - strand, within DvMF_3024at 3818.715 kb on - strand, within DvMF_3024at 3818.844 kb on + strandat 3819.029 kb on + strandat 3819.310 kb on + strand, within DvMF_3025at 3820.180 kb on + strand, within DvMF_3026at 3820.604 kb on + strand, within DvMF_3026

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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3,818,197 - DvMF_3023 0.83 +0.5
3,818,224 + DvMF_3023 0.84 +0.8
3,818,232 - DvMF_3023 0.85 -0.6
3,818,288 - DvMF_3023 0.88 -1.5
3,818,317 + +0.4
3,818,546 + DvMF_3024 0.19 -1.8
3,818,546 + DvMF_3024 0.19 -0.8
3,818,546 + DvMF_3024 0.19 -1.6
3,818,554 - DvMF_3024 0.21 -1.1
3,818,554 - DvMF_3024 0.21 -0.6
3,818,554 - DvMF_3024 0.21 -1.5
3,818,715 - DvMF_3024 0.69 +0.6
3,818,844 + -1.1
3,819,029 + -0.8
3,819,310 + DvMF_3025 0.36 -1.7
3,820,180 + DvMF_3026 0.37 -1.0
3,820,604 + DvMF_3026 0.74 -1.5

Or see this region's nucleotide sequence