Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2803

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2802 and DvMF_2803 are separated by 135 nucleotidesDvMF_2803 and DvMF_2804 are separated by 121 nucleotides DvMF_2802: DvMF_2802 - transport-associated (RefSeq), at 3,545,474 to 3,546,028 _2802 DvMF_2803: DvMF_2803 - Rubredoxin-type Fe(Cys)4 protein (RefSeq), at 3,546,164 to 3,546,322 _2803 DvMF_2804: DvMF_2804 - chromate transporter, chromate ion transporter (CHR) family (RefSeq), at 3,546,444 to 3,547,856 _2804 Position (kb) 3546 3547Strain fitness (log2 ratio) -3 -2 -1 0 1at 3545.560 kb on + strand, within DvMF_2802at 3545.603 kb on + strand, within DvMF_2802at 3545.608 kb on + strand, within DvMF_2802at 3545.642 kb on - strand, within DvMF_2802at 3545.673 kb on + strand, within DvMF_2802at 3545.680 kb on + strand, within DvMF_2802at 3545.764 kb on + strand, within DvMF_2802at 3545.764 kb on + strand, within DvMF_2802at 3545.772 kb on - strand, within DvMF_2802at 3545.772 kb on - strand, within DvMF_2802at 3545.796 kb on + strand, within DvMF_2802at 3545.860 kb on + strand, within DvMF_2802at 3545.883 kb on + strand, within DvMF_2802at 3545.883 kb on + strand, within DvMF_2802at 3545.906 kb on - strand, within DvMF_2802at 3545.914 kb on - strand, within DvMF_2802at 3546.044 kb on + strandat 3546.202 kb on - strand, within DvMF_2803at 3546.356 kb on - strandat 3546.578 kb on + strandat 3546.581 kb on - strandat 3546.583 kb on + strandat 3546.850 kb on + strand, within DvMF_2804at 3546.902 kb on + strand, within DvMF_2804at 3546.978 kb on + strand, within DvMF_2804at 3546.993 kb on + strand, within DvMF_2804at 3547.021 kb on - strand, within DvMF_2804

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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3,545,560 + DvMF_2802 0.15 -1.1
3,545,603 + DvMF_2802 0.23 +0.8
3,545,608 + DvMF_2802 0.24 -1.2
3,545,642 - DvMF_2802 0.30 -1.0
3,545,673 + DvMF_2802 0.36 -0.8
3,545,680 + DvMF_2802 0.37 -1.0
3,545,764 + DvMF_2802 0.52 -0.7
3,545,764 + DvMF_2802 0.52 -0.8
3,545,772 - DvMF_2802 0.54 -0.7
3,545,772 - DvMF_2802 0.54 -0.3
3,545,796 + DvMF_2802 0.58 -2.2
3,545,860 + DvMF_2802 0.70 -0.6
3,545,883 + DvMF_2802 0.74 -1.2
3,545,883 + DvMF_2802 0.74 -0.9
3,545,906 - DvMF_2802 0.78 -1.1
3,545,914 - DvMF_2802 0.79 +1.2
3,546,044 + -1.6
3,546,202 - DvMF_2803 0.24 -0.8
3,546,356 - -2.8
3,546,578 + -0.6
3,546,581 - -0.9
3,546,583 + -1.3
3,546,850 + DvMF_2804 0.29 -1.6
3,546,902 + DvMF_2804 0.32 -0.2
3,546,978 + DvMF_2804 0.38 -0.7
3,546,993 + DvMF_2804 0.39 -0.0
3,547,021 - DvMF_2804 0.41 -0.2

Or see this region's nucleotide sequence