Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2737 and DvMF_2738 are separated by 32 nucleotides DvMF_2738 and DvMF_2739 are separated by 2 nucleotides
DvMF_2737: DvMF_2737 - type II secretion system protein (RefSeq), at 3,462,717 to 3,463,682
_2737
DvMF_2738: DvMF_2738 - type II secretion system protein E (RefSeq), at 3,463,715 to 3,465,589
_2738
DvMF_2739: DvMF_2739 - response regulator receiver protein (RefSeq), at 3,465,592 to 3,467,037
_2739
Position (kb)
3463
3464
3465
3466 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3462.799 kb on - strand at 3462.828 kb on - strand, within DvMF_2737 at 3462.870 kb on + strand, within DvMF_2737 at 3462.937 kb on + strand, within DvMF_2737 at 3463.069 kb on - strand, within DvMF_2737 at 3463.503 kb on - strand, within DvMF_2737 at 3463.567 kb on - strand, within DvMF_2737 at 3463.616 kb on + strand at 3464.213 kb on + strand, within DvMF_2738 at 3464.351 kb on - strand, within DvMF_2738 at 3464.728 kb on + strand, within DvMF_2738 at 3464.781 kb on - strand, within DvMF_2738 at 3465.015 kb on + strand, within DvMF_2738 at 3465.194 kb on + strand, within DvMF_2738 at 3465.399 kb on - strand, within DvMF_2738 at 3465.417 kb on - strand at 3465.453 kb on + strand at 3465.535 kb on - strand at 3465.597 kb on + strand at 3465.851 kb on + strand, within DvMF_2739 at 3465.938 kb on - strand, within DvMF_2739 at 3466.248 kb on + strand, within DvMF_2739 at 3466.248 kb on + strand, within DvMF_2739 at 3466.256 kb on - strand, within DvMF_2739 at 3466.264 kb on - strand, within DvMF_2739 at 3466.444 kb on + strand, within DvMF_2739
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 3,462,799 - -0.7 3,462,828 - DvMF_2737 0.11 -0.1 3,462,870 + DvMF_2737 0.16 -2.6 3,462,937 + DvMF_2737 0.23 -2.7 3,463,069 - DvMF_2737 0.36 +0.7 3,463,503 - DvMF_2737 0.81 -1.8 3,463,567 - DvMF_2737 0.88 +0.4 3,463,616 + +0.7 3,464,213 + DvMF_2738 0.27 +0.8 3,464,351 - DvMF_2738 0.34 -2.5 3,464,728 + DvMF_2738 0.54 -0.5 3,464,781 - DvMF_2738 0.57 -1.1 3,465,015 + DvMF_2738 0.69 -0.5 3,465,194 + DvMF_2738 0.79 +0.1 3,465,399 - DvMF_2738 0.90 -2.5 3,465,417 - -1.8 3,465,453 + -1.2 3,465,535 - -0.1 3,465,597 + -1.5 3,465,851 + DvMF_2739 0.18 -0.5 3,465,938 - DvMF_2739 0.24 -0.6 3,466,248 + DvMF_2739 0.45 -3.1 3,466,248 + DvMF_2739 0.45 +1.7 3,466,256 - DvMF_2739 0.46 -3.0 3,466,264 - DvMF_2739 0.46 -0.1 3,466,444 + DvMF_2739 0.59 -0.9
Or see this region's nucleotide sequence