Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2711

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2710 and DvMF_2711 are separated by 215 nucleotidesDvMF_2711 and DvMF_2712 are separated by 9 nucleotides DvMF_2710: DvMF_2710 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,430,110 to 3,431,855 _2710 DvMF_2711: DvMF_2711 - cytochrome c family protein (RefSeq), at 3,432,071 to 3,432,541 _2711 DvMF_2712: DvMF_2712 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,432,551 to 3,434,572 _2712 Position (kb) 3432 3433Strain fitness (log2 ratio) -3 -2 -1 0 1at 3431.849 kb on + strandat 3431.857 kb on - strandat 3432.116 kb on - strandat 3432.169 kb on - strand, within DvMF_2711at 3432.304 kb on - strand, within DvMF_2711at 3432.339 kb on - strand, within DvMF_2711at 3432.608 kb on + strandat 3432.790 kb on + strand, within DvMF_2712at 3432.892 kb on - strand, within DvMF_2712at 3433.192 kb on + strand, within DvMF_2712at 3433.243 kb on + strand, within DvMF_2712at 3433.532 kb on - strand, within DvMF_2712

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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3,431,849 + -0.2
3,431,857 - -1.4
3,432,116 - -3.5
3,432,169 - DvMF_2711 0.21 -0.0
3,432,304 - DvMF_2711 0.49 -0.4
3,432,339 - DvMF_2711 0.57 -1.1
3,432,608 + -1.2
3,432,790 + DvMF_2712 0.12 -0.7
3,432,892 - DvMF_2712 0.17 +0.5
3,433,192 + DvMF_2712 0.32 -2.5
3,433,243 + DvMF_2712 0.34 +0.2
3,433,532 - DvMF_2712 0.49 +0.1

Or see this region's nucleotide sequence