Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2686

Experiment: 14 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2685 and DvMF_2686 are separated by 88 nucleotidesDvMF_2686 and DvMF_2687 are separated by 238 nucleotides DvMF_2685: DvMF_2685 - extracellular solute-binding protein family 3 (RefSeq), at 3,397,166 to 3,398,032 _2685 DvMF_2686: DvMF_2686 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,398,121 to 3,399,071 _2686 DvMF_2687: DvMF_2687 - Polysulphide reductase NrfD (RefSeq), at 3,399,310 to 3,400,563 _2687 Position (kb) 3398 3399 3400Strain fitness (log2 ratio) -3 -2 -1 0 1at 3397.459 kb on + strand, within DvMF_2685at 3397.571 kb on - strand, within DvMF_2685at 3397.697 kb on + strand, within DvMF_2685at 3397.710 kb on - strand, within DvMF_2685at 3398.254 kb on - strand, within DvMF_2686at 3398.284 kb on + strand, within DvMF_2686at 3398.399 kb on + strand, within DvMF_2686at 3398.407 kb on - strand, within DvMF_2686at 3398.407 kb on - strand, within DvMF_2686at 3398.429 kb on - strand, within DvMF_2686at 3398.496 kb on + strand, within DvMF_2686at 3398.689 kb on - strand, within DvMF_2686at 3398.802 kb on + strand, within DvMF_2686at 3398.831 kb on + strand, within DvMF_2686at 3398.839 kb on - strand, within DvMF_2686at 3399.033 kb on - strandat 3399.113 kb on + strandat 3399.144 kb on + strandat 3399.301 kb on - strandat 3399.311 kb on + strandat 3399.533 kb on + strand, within DvMF_2687at 3399.936 kb on - strand, within DvMF_2687

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
remove
3,397,459 + DvMF_2685 0.34 +0.9
3,397,571 - DvMF_2685 0.47 -0.1
3,397,697 + DvMF_2685 0.61 -0.2
3,397,710 - DvMF_2685 0.63 +0.0
3,398,254 - DvMF_2686 0.14 +0.1
3,398,284 + DvMF_2686 0.17 -1.2
3,398,399 + DvMF_2686 0.29 -0.6
3,398,407 - DvMF_2686 0.30 -0.9
3,398,407 - DvMF_2686 0.30 +0.1
3,398,429 - DvMF_2686 0.32 -0.6
3,398,496 + DvMF_2686 0.39 -0.5
3,398,689 - DvMF_2686 0.60 -0.6
3,398,802 + DvMF_2686 0.72 -2.8
3,398,831 + DvMF_2686 0.75 -3.0
3,398,839 - DvMF_2686 0.75 -1.2
3,399,033 - -1.0
3,399,113 + -0.7
3,399,144 + -0.2
3,399,301 - -0.4
3,399,311 + +0.2
3,399,533 + DvMF_2687 0.18 +1.4
3,399,936 - DvMF_2687 0.50 -0.6

Or see this region's nucleotide sequence