Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2653

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2651 and DvMF_2652 are separated by 157 nucleotidesDvMF_2652 and DvMF_2653 are separated by 61 nucleotidesDvMF_2653 and DvMF_2654 are separated by 171 nucleotidesDvMF_2654 and DvMF_2655 are separated by 213 nucleotides DvMF_2651: DvMF_2651 - dihydrouridine synthase DuS (RefSeq), at 3,352,099 to 3,353,250 _2651 DvMF_2652: DvMF_2652 - transcriptional regulator, MerR family (RefSeq), at 3,353,408 to 3,353,779 _2652 DvMF_2653: DvMF_2653 - Carboxymuconolactone decarboxylase (RefSeq), at 3,353,841 to 3,354,257 _2653 DvMF_2654: DvMF_2654 - acetyltransferase (RefSeq), at 3,354,429 to 3,354,938 _2654 DvMF_2655: DvMF_2655 - hypothetical protein (RefSeq), at 3,355,152 to 3,355,688 _2655 Position (kb) 3353 3354 3355Strain fitness (log2 ratio) -3 -2 -1 0 1at 3352.857 kb on - strand, within DvMF_2651at 3353.385 kb on - strandat 3353.433 kb on + strandat 3353.433 kb on + strandat 3353.448 kb on + strand, within DvMF_2652at 3353.792 kb on + strandat 3353.833 kb on + strandat 3354.183 kb on - strand, within DvMF_2653at 3354.384 kb on - strandat 3355.080 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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3,352,857 - DvMF_2651 0.66 -0.1
3,353,385 - -3.4
3,353,433 + -0.5
3,353,433 + -1.6
3,353,448 + DvMF_2652 0.11 -0.8
3,353,792 + -0.6
3,353,833 + -0.1
3,354,183 - DvMF_2653 0.82 -1.6
3,354,384 - +0.1
3,355,080 + +0.2

Or see this region's nucleotide sequence