Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2649 and DvMF_2650 are separated by 178 nucleotides DvMF_2650 and DvMF_2651 are separated by 57 nucleotides DvMF_2651 and DvMF_2652 are separated by 157 nucleotides DvMF_2652 and DvMF_2653 are separated by 61 nucleotides
DvMF_2649: DvMF_2649 - heat shock protein Hsp20 (RefSeq), at 3,350,757 to 3,351,314
_2649
DvMF_2650: DvMF_2650 - phosphodiesterase (RefSeq), at 3,351,493 to 3,352,041
_2650
DvMF_2651: DvMF_2651 - dihydrouridine synthase DuS (RefSeq), at 3,352,099 to 3,353,250
_2651
DvMF_2652: DvMF_2652 - transcriptional regulator, MerR family (RefSeq), at 3,353,408 to 3,353,779
_2652
DvMF_2653: DvMF_2653 - Carboxymuconolactone decarboxylase (RefSeq), at 3,353,841 to 3,354,257
_2653
Position (kb)
3352
3353
3354 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3351.132 kb on - strand, within DvMF_2649 at 3351.397 kb on - strand at 3351.432 kb on + strand at 3351.720 kb on + strand, within DvMF_2650 at 3351.726 kb on - strand, within DvMF_2650 at 3352.268 kb on - strand, within DvMF_2651 at 3352.428 kb on + strand, within DvMF_2651 at 3352.436 kb on - strand, within DvMF_2651 at 3352.441 kb on - strand, within DvMF_2651 at 3352.695 kb on + strand, within DvMF_2651 at 3352.779 kb on + strand, within DvMF_2651 at 3352.787 kb on - strand, within DvMF_2651 at 3352.787 kb on - strand, within DvMF_2651 at 3352.831 kb on + strand, within DvMF_2651 at 3352.839 kb on - strand, within DvMF_2651 at 3352.857 kb on - strand, within DvMF_2651 at 3353.385 kb on - strand at 3353.433 kb on + strand at 3353.433 kb on + strand at 3353.448 kb on + strand, within DvMF_2652 at 3353.792 kb on + strand at 3353.833 kb on + strand at 3354.183 kb on - strand, within DvMF_2653
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 3,351,132 - DvMF_2649 0.67 -3.0 3,351,397 - -0.4 3,351,432 + -0.6 3,351,720 + DvMF_2650 0.41 -2.0 3,351,726 - DvMF_2650 0.42 -2.2 3,352,268 - DvMF_2651 0.15 -2.2 3,352,428 + DvMF_2651 0.29 -0.1 3,352,436 - DvMF_2651 0.29 -0.1 3,352,441 - DvMF_2651 0.30 -0.7 3,352,695 + DvMF_2651 0.52 -1.4 3,352,779 + DvMF_2651 0.59 -1.1 3,352,787 - DvMF_2651 0.60 -1.1 3,352,787 - DvMF_2651 0.60 +0.9 3,352,831 + DvMF_2651 0.64 -4.9 3,352,839 - DvMF_2651 0.64 +0.9 3,352,857 - DvMF_2651 0.66 -0.1 3,353,385 - -3.4 3,353,433 + -0.5 3,353,433 + -1.6 3,353,448 + DvMF_2652 0.11 -0.8 3,353,792 + -0.6 3,353,833 + -0.1 3,354,183 - DvMF_2653 0.82 -1.6
Or see this region's nucleotide sequence