Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2645 and DvMF_2646 are separated by 105 nucleotides DvMF_2646 and DvMF_2647 are separated by 312 nucleotides DvMF_2647 and DvMF_2648 are separated by 272 nucleotides
DvMF_2645: DvMF_2645 - peptidase U32 (RefSeq), at 3,347,266 to 3,348,558
_2645
DvMF_2646: DvMF_2646 - PHP domain protein (RefSeq), at 3,348,664 to 3,349,548
_2646
DvMF_2647: DvMF_2647 - protein of unknown function DUF343 (RefSeq), at 3,349,861 to 3,350,061
_2647
DvMF_2648: DvMF_2648 - heat shock protein Hsp20 (RefSeq), at 3,350,334 to 3,350,747
_2648
Position (kb)
3348
3349
3350 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3347.924 kb on - strand, within DvMF_2645 at 3348.026 kb on + strand, within DvMF_2645 at 3348.098 kb on + strand, within DvMF_2645 at 3348.306 kb on - strand, within DvMF_2645 at 3348.573 kb on + strand at 3348.581 kb on - strand at 3348.696 kb on + strand at 3348.696 kb on + strand at 3348.704 kb on - strand at 3348.838 kb on - strand, within DvMF_2646 at 3348.919 kb on + strand, within DvMF_2646 at 3348.965 kb on + strand, within DvMF_2646 at 3349.405 kb on + strand, within DvMF_2646 at 3349.579 kb on + strand at 3349.587 kb on - strand at 3349.679 kb on + strand at 3349.791 kb on - strand at 3349.846 kb on + strand at 3350.054 kb on - strand at 3350.140 kb on + strand at 3350.186 kb on + strand at 3350.261 kb on + strand at 3350.505 kb on - strand, within DvMF_2648
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 3,347,924 - DvMF_2645 0.51 -2.4 3,348,026 + DvMF_2645 0.59 -3.1 3,348,098 + DvMF_2645 0.64 -2.0 3,348,306 - DvMF_2645 0.80 -2.5 3,348,573 + -2.1 3,348,581 - -3.2 3,348,696 + -1.0 3,348,696 + -0.8 3,348,704 - -0.9 3,348,838 - DvMF_2646 0.20 -1.5 3,348,919 + DvMF_2646 0.29 -1.3 3,348,965 + DvMF_2646 0.34 -0.6 3,349,405 + DvMF_2646 0.84 -3.8 3,349,579 + -2.3 3,349,587 - -1.8 3,349,679 + -0.9 3,349,791 - +0.2 3,349,846 + -1.9 3,350,054 - -2.4 3,350,140 + -1.2 3,350,186 + -1.2 3,350,261 + -2.5 3,350,505 - DvMF_2648 0.41 -1.4
Or see this region's nucleotide sequence