Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2585

Experiment: 14 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2584 and DvMF_2585 are separated by 447 nucleotidesDvMF_2585 and DvMF_2586 are separated by 46 nucleotides DvMF_2584: DvMF_2584 - phosphoenolpyruvate-protein phosphotransferase (RefSeq), at 3,267,997 to 3,270,537 _2584 DvMF_2585: DvMF_2585 - anti-sigma-28 factor, FlgM (RefSeq), at 3,270,985 to 3,271,296 _2585 DvMF_2586: DvMF_2586 - hypothetical protein (RefSeq), at 3,271,343 to 3,271,759 _2586 Position (kb) 3270 3271 3272Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3270.017 kb on - strand, within DvMF_2584at 3270.204 kb on - strand, within DvMF_2584at 3270.258 kb on + strand, within DvMF_2584at 3270.308 kb on - strandat 3270.444 kb on - strandat 3270.469 kb on - strandat 3270.928 kb on - strandat 3271.141 kb on + strand, within DvMF_2585at 3271.250 kb on - strand, within DvMF_2585at 3271.261 kb on - strand, within DvMF_2585at 3271.341 kb on + strandat 3271.864 kb on - strandat 3271.875 kb on - strandat 3272.162 kb on - strandat 3272.172 kb on - strandat 3272.206 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
remove
3,270,017 - DvMF_2584 0.79 -0.0
3,270,204 - DvMF_2584 0.87 -0.7
3,270,258 + DvMF_2584 0.89 -3.2
3,270,308 - +2.1
3,270,444 - +0.2
3,270,469 - -2.4
3,270,928 - +0.4
3,271,141 + DvMF_2585 0.50 -3.8
3,271,250 - DvMF_2585 0.85 -0.6
3,271,261 - DvMF_2585 0.88 -1.6
3,271,341 + -1.4
3,271,864 - -0.7
3,271,875 - -1.0
3,272,162 - -0.2
3,272,172 - +1.8
3,272,206 - +0.5

Or see this region's nucleotide sequence