Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2566

Experiment: 14 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2565 and DvMF_2566 are separated by 91 nucleotidesDvMF_2566 and DvMF_2567 are separated by 8 nucleotides DvMF_2565: DvMF_2565 - periplasmic phosphate binding protein (RefSeq), at 3,242,150 to 3,243,184 _2565 DvMF_2566: DvMF_2566 - phosphate ABC transporter, inner membrane subunit PstC (RefSeq), at 3,243,276 to 3,244,520 _2566 DvMF_2567: DvMF_2567 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,244,529 to 3,245,698 _2567 Position (kb) 3243 3244 3245Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3242.390 kb on - strand, within DvMF_2565at 3242.622 kb on + strand, within DvMF_2565at 3243.046 kb on + strand, within DvMF_2565at 3243.054 kb on - strand, within DvMF_2565at 3243.140 kb on + strandat 3243.335 kb on + strandat 3243.335 kb on + strandat 3243.366 kb on - strandat 3243.456 kb on - strand, within DvMF_2566at 3243.511 kb on - strand, within DvMF_2566at 3243.610 kb on - strand, within DvMF_2566at 3243.637 kb on - strand, within DvMF_2566at 3243.637 kb on - strand, within DvMF_2566at 3243.898 kb on - strand, within DvMF_2566at 3243.984 kb on + strand, within DvMF_2566at 3243.992 kb on - strand, within DvMF_2566at 3244.116 kb on - strand, within DvMF_2566at 3244.192 kb on - strand, within DvMF_2566at 3244.238 kb on - strand, within DvMF_2566at 3244.351 kb on + strand, within DvMF_2566at 3244.466 kb on + strandat 3244.730 kb on + strand, within DvMF_2567at 3244.735 kb on + strand, within DvMF_2567at 3244.749 kb on - strand, within DvMF_2567at 3244.834 kb on + strand, within DvMF_2567at 3244.869 kb on + strand, within DvMF_2567at 3244.909 kb on + strand, within DvMF_2567at 3244.941 kb on - strand, within DvMF_2567at 3244.970 kb on + strand, within DvMF_2567at 3245.001 kb on + strand, within DvMF_2567at 3245.268 kb on + strand, within DvMF_2567at 3245.460 kb on - strand, within DvMF_2567

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
remove
3,242,390 - DvMF_2565 0.23 -3.9
3,242,622 + DvMF_2565 0.46 -3.9
3,243,046 + DvMF_2565 0.87 -2.9
3,243,054 - DvMF_2565 0.87 -1.6
3,243,140 + -4.1
3,243,335 + -2.8
3,243,335 + -1.8
3,243,366 - -4.6
3,243,456 - DvMF_2566 0.14 -0.4
3,243,511 - DvMF_2566 0.19 -3.6
3,243,610 - DvMF_2566 0.27 -4.2
3,243,637 - DvMF_2566 0.29 -4.6
3,243,637 - DvMF_2566 0.29 -4.0
3,243,898 - DvMF_2566 0.50 -4.5
3,243,984 + DvMF_2566 0.57 -4.2
3,243,992 - DvMF_2566 0.58 -4.9
3,244,116 - DvMF_2566 0.67 -4.6
3,244,192 - DvMF_2566 0.74 -2.6
3,244,238 - DvMF_2566 0.77 -5.5
3,244,351 + DvMF_2566 0.86 -2.3
3,244,466 + -2.2
3,244,730 + DvMF_2567 0.17 -4.6
3,244,735 + DvMF_2567 0.18 -4.4
3,244,749 - DvMF_2567 0.19 -2.3
3,244,834 + DvMF_2567 0.26 -4.9
3,244,869 + DvMF_2567 0.29 -3.1
3,244,909 + DvMF_2567 0.32 -3.8
3,244,941 - DvMF_2567 0.35 -2.1
3,244,970 + DvMF_2567 0.38 -4.3
3,245,001 + DvMF_2567 0.40 -3.6
3,245,268 + DvMF_2567 0.63 -3.6
3,245,460 - DvMF_2567 0.80 -3.4

Or see this region's nucleotide sequence