Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2552

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2551 and DvMF_2552 are separated by 115 nucleotidesDvMF_2552 and DvMF_2553 are separated by 5 nucleotidesDvMF_2553 and DvMF_2554 are separated by 85 nucleotides DvMF_2551: DvMF_2551 - response regulator receiver protein (RefSeq), at 3,225,890 to 3,226,858 _2551 DvMF_2552: DvMF_2552 - UspA domain protein (RefSeq), at 3,226,974 to 3,227,891 _2552 DvMF_2553: DvMF_2553 - hypothetical protein (RefSeq), at 3,227,897 to 3,228,463 _2553 DvMF_2554: DvMF_2554 - acidic cytochrome c3 (RefSeq), at 3,228,549 to 3,229,013 _2554 Position (kb) 3226 3227 3228Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3226.002 kb on + strand, within DvMF_2551at 3226.245 kb on + strand, within DvMF_2551at 3226.266 kb on + strand, within DvMF_2551at 3226.372 kb on + strand, within DvMF_2551at 3226.382 kb on + strand, within DvMF_2551at 3226.650 kb on - strand, within DvMF_2551at 3226.650 kb on - strand, within DvMF_2551at 3226.717 kb on + strand, within DvMF_2551at 3226.768 kb on - strandat 3226.859 kb on + strandat 3226.926 kb on + strandat 3227.273 kb on + strand, within DvMF_2552at 3227.288 kb on + strand, within DvMF_2552at 3227.310 kb on - strand, within DvMF_2552at 3227.463 kb on + strand, within DvMF_2552at 3227.471 kb on - strand, within DvMF_2552at 3227.603 kb on - strand, within DvMF_2552at 3227.603 kb on - strand, within DvMF_2552at 3227.788 kb on + strand, within DvMF_2552at 3228.056 kb on + strand, within DvMF_2553at 3228.064 kb on - strand, within DvMF_2553at 3228.099 kb on + strand, within DvMF_2553at 3228.214 kb on + strand, within DvMF_2553at 3228.222 kb on - strand, within DvMF_2553at 3228.285 kb on + strand, within DvMF_2553at 3228.295 kb on + strand, within DvMF_2553at 3228.295 kb on + strand, within DvMF_2553at 3228.351 kb on + strand, within DvMF_2553at 3228.702 kb on - strand, within DvMF_2554at 3228.801 kb on - strand, within DvMF_2554

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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3,226,002 + DvMF_2551 0.12 -1.6
3,226,245 + DvMF_2551 0.37 +0.0
3,226,266 + DvMF_2551 0.39 +0.3
3,226,372 + DvMF_2551 0.50 -0.1
3,226,382 + DvMF_2551 0.51 -2.8
3,226,650 - DvMF_2551 0.78 -0.0
3,226,650 - DvMF_2551 0.78 +0.5
3,226,717 + DvMF_2551 0.85 -1.2
3,226,768 - -0.7
3,226,859 + +0.9
3,226,926 + -0.8
3,227,273 + DvMF_2552 0.33 -4.5
3,227,288 + DvMF_2552 0.34 -3.6
3,227,310 - DvMF_2552 0.37 -2.8
3,227,463 + DvMF_2552 0.53 -1.0
3,227,471 - DvMF_2552 0.54 -2.2
3,227,603 - DvMF_2552 0.69 -0.2
3,227,603 - DvMF_2552 0.69 -3.4
3,227,788 + DvMF_2552 0.89 -0.9
3,228,056 + DvMF_2553 0.28 -1.8
3,228,064 - DvMF_2553 0.29 -1.7
3,228,099 + DvMF_2553 0.36 -1.4
3,228,214 + DvMF_2553 0.56 -2.2
3,228,222 - DvMF_2553 0.57 -1.8
3,228,285 + DvMF_2553 0.68 -3.5
3,228,295 + DvMF_2553 0.70 -0.6
3,228,295 + DvMF_2553 0.70 +0.6
3,228,351 + DvMF_2553 0.80 -1.0
3,228,702 - DvMF_2554 0.33 +1.5
3,228,801 - DvMF_2554 0.54 +2.4

Or see this region's nucleotide sequence