Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2551 and DvMF_2552 are separated by 115 nucleotides DvMF_2552 and DvMF_2553 are separated by 5 nucleotides DvMF_2553 and DvMF_2554 are separated by 85 nucleotides
DvMF_2551: DvMF_2551 - response regulator receiver protein (RefSeq), at 3,225,890 to 3,226,858
_2551
DvMF_2552: DvMF_2552 - UspA domain protein (RefSeq), at 3,226,974 to 3,227,891
_2552
DvMF_2553: DvMF_2553 - hypothetical protein (RefSeq), at 3,227,897 to 3,228,463
_2553
DvMF_2554: DvMF_2554 - acidic cytochrome c3 (RefSeq), at 3,228,549 to 3,229,013
_2554
Position (kb)
3226
3227
3228 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3226.002 kb on + strand, within DvMF_2551 at 3226.245 kb on + strand, within DvMF_2551 at 3226.266 kb on + strand, within DvMF_2551 at 3226.372 kb on + strand, within DvMF_2551 at 3226.382 kb on + strand, within DvMF_2551 at 3226.650 kb on - strand, within DvMF_2551 at 3226.650 kb on - strand, within DvMF_2551 at 3226.717 kb on + strand, within DvMF_2551 at 3226.768 kb on - strand at 3226.859 kb on + strand at 3226.926 kb on + strand at 3227.273 kb on + strand, within DvMF_2552 at 3227.288 kb on + strand, within DvMF_2552 at 3227.310 kb on - strand, within DvMF_2552 at 3227.463 kb on + strand, within DvMF_2552 at 3227.471 kb on - strand, within DvMF_2552 at 3227.603 kb on - strand, within DvMF_2552 at 3227.603 kb on - strand, within DvMF_2552 at 3227.788 kb on + strand, within DvMF_2552 at 3228.056 kb on + strand, within DvMF_2553 at 3228.064 kb on - strand, within DvMF_2553 at 3228.099 kb on + strand, within DvMF_2553 at 3228.214 kb on + strand, within DvMF_2553 at 3228.222 kb on - strand, within DvMF_2553 at 3228.285 kb on + strand, within DvMF_2553 at 3228.295 kb on + strand, within DvMF_2553 at 3228.295 kb on + strand, within DvMF_2553 at 3228.351 kb on + strand, within DvMF_2553 at 3228.702 kb on - strand, within DvMF_2554 at 3228.801 kb on - strand, within DvMF_2554
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 3,226,002 + DvMF_2551 0.12 -1.6 3,226,245 + DvMF_2551 0.37 +0.0 3,226,266 + DvMF_2551 0.39 +0.3 3,226,372 + DvMF_2551 0.50 -0.1 3,226,382 + DvMF_2551 0.51 -2.8 3,226,650 - DvMF_2551 0.78 -0.0 3,226,650 - DvMF_2551 0.78 +0.5 3,226,717 + DvMF_2551 0.85 -1.2 3,226,768 - -0.7 3,226,859 + +0.9 3,226,926 + -0.8 3,227,273 + DvMF_2552 0.33 -4.5 3,227,288 + DvMF_2552 0.34 -3.6 3,227,310 - DvMF_2552 0.37 -2.8 3,227,463 + DvMF_2552 0.53 -1.0 3,227,471 - DvMF_2552 0.54 -2.2 3,227,603 - DvMF_2552 0.69 -0.2 3,227,603 - DvMF_2552 0.69 -3.4 3,227,788 + DvMF_2552 0.89 -0.9 3,228,056 + DvMF_2553 0.28 -1.8 3,228,064 - DvMF_2553 0.29 -1.7 3,228,099 + DvMF_2553 0.36 -1.4 3,228,214 + DvMF_2553 0.56 -2.2 3,228,222 - DvMF_2553 0.57 -1.8 3,228,285 + DvMF_2553 0.68 -3.5 3,228,295 + DvMF_2553 0.70 -0.6 3,228,295 + DvMF_2553 0.70 +0.6 3,228,351 + DvMF_2553 0.80 -1.0 3,228,702 - DvMF_2554 0.33 +1.5 3,228,801 - DvMF_2554 0.54 +2.4
Or see this region's nucleotide sequence