Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2542

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2541 and DvMF_2542 are separated by 95 nucleotidesDvMF_2542 and DvMF_2543 are separated by 73 nucleotidesDvMF_2543 and DvMF_2544 overlap by 4 nucleotides DvMF_2541: DvMF_2541 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,210,013 to 3,212,637 _2541 DvMF_2542: DvMF_2542 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,212,733 to 3,214,526 _2542 DvMF_2543: DvMF_2543 - response regulator receiver protein (RefSeq), at 3,214,600 to 3,214,965 _2543 DvMF_2544: DvMF_2544 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,214,962 to 3,216,506 _2544 Position (kb) 3212 3213 3214 3215Strain fitness (log2 ratio) -3 -2 -1 0 1at 3211.874 kb on + strand, within DvMF_2541at 3211.874 kb on + strand, within DvMF_2541at 3211.874 kb on + strand, within DvMF_2541at 3211.874 kb on + strand, within DvMF_2541at 3212.063 kb on + strand, within DvMF_2541at 3212.337 kb on + strand, within DvMF_2541at 3212.462 kb on - strandat 3212.518 kb on + strandat 3212.591 kb on - strandat 3212.694 kb on - strandat 3212.715 kb on - strandat 3212.715 kb on - strandat 3212.837 kb on - strandat 3213.129 kb on + strand, within DvMF_2542at 3213.299 kb on - strand, within DvMF_2542at 3213.542 kb on + strand, within DvMF_2542at 3213.812 kb on + strand, within DvMF_2542at 3213.964 kb on + strand, within DvMF_2542at 3214.268 kb on + strand, within DvMF_2542at 3214.453 kb on + strandat 3214.463 kb on + strandat 3214.482 kb on - strandat 3214.536 kb on + strandat 3214.771 kb on - strand, within DvMF_2543at 3214.855 kb on + strand, within DvMF_2543at 3214.986 kb on + strandat 3215.245 kb on - strand, within DvMF_2544at 3215.476 kb on + strand, within DvMF_2544at 3215.476 kb on + strand, within DvMF_2544

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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3,211,874 + DvMF_2541 0.71 -0.7
3,211,874 + DvMF_2541 0.71 -1.2
3,211,874 + DvMF_2541 0.71 -3.1
3,211,874 + DvMF_2541 0.71 -1.5
3,212,063 + DvMF_2541 0.78 +0.1
3,212,337 + DvMF_2541 0.89 -1.3
3,212,462 - -0.6
3,212,518 + -3.0
3,212,591 - +0.1
3,212,694 - -0.8
3,212,715 - -0.7
3,212,715 - -0.7
3,212,837 - -1.8
3,213,129 + DvMF_2542 0.22 +0.9
3,213,299 - DvMF_2542 0.32 -1.3
3,213,542 + DvMF_2542 0.45 -1.5
3,213,812 + DvMF_2542 0.60 -0.4
3,213,964 + DvMF_2542 0.69 -0.4
3,214,268 + DvMF_2542 0.86 +0.6
3,214,453 + -0.0
3,214,463 + -2.0
3,214,482 - -1.6
3,214,536 + -3.2
3,214,771 - DvMF_2543 0.47 -1.8
3,214,855 + DvMF_2543 0.70 -0.1
3,214,986 + -0.9
3,215,245 - DvMF_2544 0.18 +0.4
3,215,476 + DvMF_2544 0.33 +0.1
3,215,476 + DvMF_2544 0.33 -1.6

Or see this region's nucleotide sequence