Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2541 and DvMF_2542 are separated by 95 nucleotides DvMF_2542 and DvMF_2543 are separated by 73 nucleotides DvMF_2543 and DvMF_2544 overlap by 4 nucleotides
DvMF_2541: DvMF_2541 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,210,013 to 3,212,637
_2541
DvMF_2542: DvMF_2542 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,212,733 to 3,214,526
_2542
DvMF_2543: DvMF_2543 - response regulator receiver protein (RefSeq), at 3,214,600 to 3,214,965
_2543
DvMF_2544: DvMF_2544 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,214,962 to 3,216,506
_2544
Position (kb)
3212
3213
3214
3215 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3211.874 kb on + strand, within DvMF_2541 at 3211.874 kb on + strand, within DvMF_2541 at 3211.874 kb on + strand, within DvMF_2541 at 3211.874 kb on + strand, within DvMF_2541 at 3212.063 kb on + strand, within DvMF_2541 at 3212.337 kb on + strand, within DvMF_2541 at 3212.462 kb on - strand at 3212.518 kb on + strand at 3212.591 kb on - strand at 3212.694 kb on - strand at 3212.715 kb on - strand at 3212.715 kb on - strand at 3212.837 kb on - strand at 3213.129 kb on + strand, within DvMF_2542 at 3213.299 kb on - strand, within DvMF_2542 at 3213.542 kb on + strand, within DvMF_2542 at 3213.812 kb on + strand, within DvMF_2542 at 3213.964 kb on + strand, within DvMF_2542 at 3214.268 kb on + strand, within DvMF_2542 at 3214.453 kb on + strand at 3214.463 kb on + strand at 3214.482 kb on - strand at 3214.536 kb on + strand at 3214.771 kb on - strand, within DvMF_2543 at 3214.855 kb on + strand, within DvMF_2543 at 3214.986 kb on + strand at 3215.245 kb on - strand, within DvMF_2544 at 3215.476 kb on + strand, within DvMF_2544 at 3215.476 kb on + strand, within DvMF_2544
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 3,211,874 + DvMF_2541 0.71 -0.7 3,211,874 + DvMF_2541 0.71 -1.2 3,211,874 + DvMF_2541 0.71 -3.1 3,211,874 + DvMF_2541 0.71 -1.5 3,212,063 + DvMF_2541 0.78 +0.1 3,212,337 + DvMF_2541 0.89 -1.3 3,212,462 - -0.6 3,212,518 + -3.0 3,212,591 - +0.1 3,212,694 - -0.8 3,212,715 - -0.7 3,212,715 - -0.7 3,212,837 - -1.8 3,213,129 + DvMF_2542 0.22 +0.9 3,213,299 - DvMF_2542 0.32 -1.3 3,213,542 + DvMF_2542 0.45 -1.5 3,213,812 + DvMF_2542 0.60 -0.4 3,213,964 + DvMF_2542 0.69 -0.4 3,214,268 + DvMF_2542 0.86 +0.6 3,214,453 + -0.0 3,214,463 + -2.0 3,214,482 - -1.6 3,214,536 + -3.2 3,214,771 - DvMF_2543 0.47 -1.8 3,214,855 + DvMF_2543 0.70 -0.1 3,214,986 + -0.9 3,215,245 - DvMF_2544 0.18 +0.4 3,215,476 + DvMF_2544 0.33 +0.1 3,215,476 + DvMF_2544 0.33 -1.6
Or see this region's nucleotide sequence