Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2458 and DvMF_2459 are separated by 13 nucleotides DvMF_2459 and frdB are separated by 150 nucleotides
DvMF_2458: DvMF_2458 - fumarate reductase respiratory complex transmembrane subunit (RefSeq), at 3,100,909 to 3,101,562
_2458
DvMF_2459: DvMF_2459 - fumarate reductase flavoprotein subunit (RefSeq), at 3,101,576 to 3,103,393
_2459
DvMF_2460: frdB - fumarate reductase iron-sulfur subunit (RefSeq), at 3,103,544 to 3,104,287
frdB
Position (kb)
3101
3102
3103
3104 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3100.839 kb on - strand at 3101.009 kb on + strand, within DvMF_2458 at 3101.258 kb on - strand, within DvMF_2458 at 3101.493 kb on - strand, within DvMF_2458 at 3102.053 kb on + strand, within DvMF_2459 at 3102.061 kb on - strand, within DvMF_2459 at 3102.061 kb on - strand, within DvMF_2459 at 3102.063 kb on - strand, within DvMF_2459 at 3102.073 kb on - strand, within DvMF_2459 at 3102.276 kb on + strand, within DvMF_2459 at 3102.333 kb on - strand, within DvMF_2459 at 3102.500 kb on + strand, within DvMF_2459 at 3102.614 kb on - strand, within DvMF_2459 at 3102.745 kb on - strand, within DvMF_2459 at 3102.967 kb on + strand, within DvMF_2459 at 3102.975 kb on - strand, within DvMF_2459 at 3103.021 kb on - strand, within DvMF_2459 at 3103.045 kb on - strand, within DvMF_2459 at 3103.050 kb on - strand, within DvMF_2459 at 3103.070 kb on + strand, within DvMF_2459 at 3103.102 kb on - strand, within DvMF_2459 at 3103.110 kb on + strand, within DvMF_2459 at 3103.138 kb on + strand, within DvMF_2459 at 3103.224 kb on + strand at 3103.232 kb on - strand at 3103.340 kb on + strand at 3103.398 kb on + strand at 3103.679 kb on + strand, within frdB at 3103.819 kb on - strand, within frdB at 3104.071 kb on - strand, within frdB at 3104.241 kb on + strand at 3104.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 3,100,839 - -1.2 3,101,009 + DvMF_2458 0.15 -3.2 3,101,258 - DvMF_2458 0.53 -1.8 3,101,493 - DvMF_2458 0.89 +0.0 3,102,053 + DvMF_2459 0.26 -0.8 3,102,061 - DvMF_2459 0.27 -0.6 3,102,061 - DvMF_2459 0.27 -2.9 3,102,063 - DvMF_2459 0.27 -1.3 3,102,073 - DvMF_2459 0.27 -0.5 3,102,276 + DvMF_2459 0.39 -2.7 3,102,333 - DvMF_2459 0.42 -0.8 3,102,500 + DvMF_2459 0.51 -5.0 3,102,614 - DvMF_2459 0.57 -3.7 3,102,745 - DvMF_2459 0.64 -3.4 3,102,967 + DvMF_2459 0.77 -3.0 3,102,975 - DvMF_2459 0.77 -0.5 3,103,021 - DvMF_2459 0.79 -1.3 3,103,045 - DvMF_2459 0.81 -1.1 3,103,050 - DvMF_2459 0.81 -0.2 3,103,070 + DvMF_2459 0.82 -2.3 3,103,102 - DvMF_2459 0.84 -0.2 3,103,110 + DvMF_2459 0.84 -2.1 3,103,138 + DvMF_2459 0.86 -0.8 3,103,224 + -3.1 3,103,232 - -0.9 3,103,340 + -1.2 3,103,398 + -0.7 3,103,679 + frdB DvMF_2460 0.18 -1.5 3,103,819 - frdB DvMF_2460 0.37 -2.1 3,104,071 - frdB DvMF_2460 0.71 -2.3 3,104,241 + -0.4 3,104,249 - -0.8
Or see this region's nucleotide sequence