Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2451 and DvMF_R0069 are separated by 198 nucleotides DvMF_R0069 and DvMF_2452 are separated by 398 nucleotides DvMF_2452 and DvMF_2453 are separated by 156 nucleotides
DvMF_2451: DvMF_2451 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (RefSeq), at 3,088,361 to 3,089,614
_2451
DvMF_R0069: DvMF_R0069 - tRNA-His (RefSeq), at 3,089,813 to 3,089,888
_R0069
DvMF_2452: DvMF_2452 - multi-sensor hybrid histidine kinase (RefSeq), at 3,090,287 to 3,093,820
_2452
DvMF_2453: DvMF_2453 - integral membrane protein MviN (RefSeq), at 3,093,977 to 3,095,767
_2453
Position (kb)
3090
3091
3092
3093
3094 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3089.679 kb on - strand at 3090.234 kb on - strand at 3090.274 kb on - strand at 3090.562 kb on + strand at 3090.965 kb on + strand, within DvMF_2452 at 3090.973 kb on - strand, within DvMF_2452 at 3090.995 kb on - strand, within DvMF_2452 at 3091.254 kb on - strand, within DvMF_2452 at 3091.521 kb on - strand, within DvMF_2452 at 3091.795 kb on + strand, within DvMF_2452 at 3092.095 kb on + strand, within DvMF_2452 at 3092.206 kb on - strand, within DvMF_2452 at 3092.224 kb on + strand, within DvMF_2452 at 3092.344 kb on - strand, within DvMF_2452 at 3092.353 kb on + strand, within DvMF_2452 at 3092.353 kb on + strand, within DvMF_2452 at 3092.361 kb on - strand, within DvMF_2452 at 3092.444 kb on + strand, within DvMF_2452 at 3092.507 kb on - strand, within DvMF_2452 at 3092.682 kb on + strand, within DvMF_2452 at 3092.807 kb on - strand, within DvMF_2452 at 3092.908 kb on + strand, within DvMF_2452 at 3092.991 kb on - strand, within DvMF_2452 at 3092.991 kb on - strand, within DvMF_2452 at 3093.283 kb on + strand, within DvMF_2452 at 3093.291 kb on - strand, within DvMF_2452 at 3093.433 kb on - strand, within DvMF_2452 at 3093.510 kb on + strand at 3093.518 kb on - strand at 3093.673 kb on + strand at 3093.744 kb on + strand at 3094.056 kb on - strand at 3094.079 kb on + strand at 3094.129 kb on - strand at 3094.178 kb on + strand, within DvMF_2453 at 3094.341 kb on - strand, within DvMF_2453 at 3094.612 kb on - strand, within DvMF_2453 at 3094.669 kb on + strand, within DvMF_2453 at 3094.723 kb on + strand, within DvMF_2453 at 3094.731 kb on - strand, within DvMF_2453 at 3094.781 kb on + strand, within DvMF_2453
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 3,089,679 - +0.1 3,090,234 - +0.8 3,090,274 - -3.5 3,090,562 + -0.6 3,090,965 + DvMF_2452 0.19 +0.3 3,090,973 - DvMF_2452 0.19 -0.4 3,090,995 - DvMF_2452 0.20 +0.9 3,091,254 - DvMF_2452 0.27 +1.8 3,091,521 - DvMF_2452 0.35 +0.3 3,091,795 + DvMF_2452 0.43 -0.4 3,092,095 + DvMF_2452 0.51 -0.6 3,092,206 - DvMF_2452 0.54 +0.2 3,092,224 + DvMF_2452 0.55 -2.5 3,092,344 - DvMF_2452 0.58 -0.6 3,092,353 + DvMF_2452 0.58 -1.4 3,092,353 + DvMF_2452 0.58 -1.1 3,092,361 - DvMF_2452 0.59 -0.3 3,092,444 + DvMF_2452 0.61 -2.8 3,092,507 - DvMF_2452 0.63 -2.7 3,092,682 + DvMF_2452 0.68 -2.6 3,092,807 - DvMF_2452 0.71 -0.6 3,092,908 + DvMF_2452 0.74 +1.1 3,092,991 - DvMF_2452 0.77 -0.5 3,092,991 - DvMF_2452 0.77 -0.4 3,093,283 + DvMF_2452 0.85 -1.6 3,093,291 - DvMF_2452 0.85 -1.2 3,093,433 - DvMF_2452 0.89 -3.1 3,093,510 + -2.7 3,093,518 - -2.7 3,093,673 + -0.1 3,093,744 + -0.2 3,094,056 - -0.0 3,094,079 + +0.2 3,094,129 - -0.1 3,094,178 + DvMF_2453 0.11 +0.0 3,094,341 - DvMF_2453 0.20 -1.2 3,094,612 - DvMF_2453 0.35 -0.3 3,094,669 + DvMF_2453 0.39 -2.2 3,094,723 + DvMF_2453 0.42 -2.2 3,094,731 - DvMF_2453 0.42 -0.6 3,094,781 + DvMF_2453 0.45 +0.6
Or see this region's nucleotide sequence