Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2411

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2410 and DvMF_2411 are separated by 15 nucleotidesDvMF_2411 and DvMF_2412 are separated by 60 nucleotides DvMF_2410: DvMF_2410 - protein serine/threonine phosphatase (RefSeq), at 3,047,840 to 3,049,822 _2410 DvMF_2411: DvMF_2411 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,049,838 to 3,051,172 _2411 DvMF_2412: DvMF_2412 - type III secretion protein, YscU/HrpY family (RefSeq), at 3,051,233 to 3,052,273 _2412 Position (kb) 3049 3050 3051 3052Strain fitness (log2 ratio) -3 -2 -1 0 1at 3048.926 kb on + strand, within DvMF_2410at 3049.566 kb on + strand, within DvMF_2410at 3049.592 kb on + strand, within DvMF_2410at 3049.729 kb on + strandat 3049.738 kb on + strandat 3049.810 kb on + strandat 3050.177 kb on - strand, within DvMF_2411at 3050.227 kb on + strand, within DvMF_2411at 3050.269 kb on - strand, within DvMF_2411at 3050.295 kb on + strand, within DvMF_2411at 3050.460 kb on + strand, within DvMF_2411at 3050.542 kb on + strand, within DvMF_2411at 3050.696 kb on + strand, within DvMF_2411at 3050.910 kb on + strand, within DvMF_2411at 3051.112 kb on - strandat 3051.260 kb on + strandat 3051.279 kb on + strandat 3051.287 kb on - strandat 3051.287 kb on - strandat 3051.300 kb on - strandat 3051.461 kb on + strand, within DvMF_2412at 3051.510 kb on - strand, within DvMF_2412at 3051.537 kb on - strand, within DvMF_2412at 3051.578 kb on - strand, within DvMF_2412at 3051.666 kb on + strand, within DvMF_2412at 3051.736 kb on - strand, within DvMF_2412at 3051.972 kb on - strand, within DvMF_2412at 3051.990 kb on + strand, within DvMF_2412

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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3,048,926 + DvMF_2410 0.55 -0.1
3,049,566 + DvMF_2410 0.87 -3.2
3,049,592 + DvMF_2410 0.88 -2.8
3,049,729 + -0.5
3,049,738 + +0.4
3,049,810 + -1.9
3,050,177 - DvMF_2411 0.25 -2.2
3,050,227 + DvMF_2411 0.29 +0.9
3,050,269 - DvMF_2411 0.32 -0.7
3,050,295 + DvMF_2411 0.34 +0.2
3,050,460 + DvMF_2411 0.47 -0.8
3,050,542 + DvMF_2411 0.53 -0.2
3,050,696 + DvMF_2411 0.64 +0.2
3,050,910 + DvMF_2411 0.80 -1.4
3,051,112 - -0.4
3,051,260 + -1.9
3,051,279 + -1.6
3,051,287 - -0.9
3,051,287 - -1.6
3,051,300 - -1.2
3,051,461 + DvMF_2412 0.22 -0.4
3,051,510 - DvMF_2412 0.27 -1.3
3,051,537 - DvMF_2412 0.29 -1.0
3,051,578 - DvMF_2412 0.33 -0.8
3,051,666 + DvMF_2412 0.42 -1.4
3,051,736 - DvMF_2412 0.48 -3.3
3,051,972 - DvMF_2412 0.71 -1.0
3,051,990 + DvMF_2412 0.73 +0.8

Or see this region's nucleotide sequence