Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2394

Experiment: 14 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2393 and DvMF_2394 are separated by 571 nucleotidesDvMF_2394 and DvMF_2395 are separated by 173 nucleotides DvMF_2393: DvMF_2393 - hypothetical protein (RefSeq), at 3,025,156 to 3,025,932 _2393 DvMF_2394: DvMF_2394 - hypothetical protein (RefSeq), at 3,026,504 to 3,026,854 _2394 DvMF_2395: DvMF_2395 - glycosyl transferase, group 2 family protein (RefSeq), at 3,027,028 to 3,028,716 _2395 Position (kb) 3026 3027Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3025.613 kb on + strand, within DvMF_2393at 3025.950 kb on + strandat 3026.006 kb on + strandat 3026.079 kb on - strandat 3026.403 kb on + strandat 3026.439 kb on - strandat 3026.564 kb on - strand, within DvMF_2394at 3026.581 kb on + strand, within DvMF_2394at 3026.581 kb on + strand, within DvMF_2394at 3026.581 kb on + strand, within DvMF_2394at 3026.716 kb on - strand, within DvMF_2394at 3027.014 kb on + strandat 3027.023 kb on + strandat 3027.083 kb on + strandat 3027.177 kb on + strandat 3027.185 kb on - strandat 3027.260 kb on - strand, within DvMF_2395at 3027.362 kb on + strand, within DvMF_2395at 3027.625 kb on - strand, within DvMF_2395at 3027.665 kb on - strand, within DvMF_2395at 3027.684 kb on - strand, within DvMF_2395at 3027.688 kb on - strand, within DvMF_2395at 3027.788 kb on + strand, within DvMF_2395

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
remove
3,025,613 + DvMF_2393 0.59 -0.6
3,025,950 + -1.0
3,026,006 + -0.1
3,026,079 - -1.4
3,026,403 + -2.2
3,026,439 - -0.4
3,026,564 - DvMF_2394 0.17 -1.4
3,026,581 + DvMF_2394 0.22 -0.8
3,026,581 + DvMF_2394 0.22 -3.0
3,026,581 + DvMF_2394 0.22 -1.3
3,026,716 - DvMF_2394 0.60 -4.0
3,027,014 + -1.4
3,027,023 + -0.9
3,027,083 + -2.5
3,027,177 + -0.8
3,027,185 - -1.5
3,027,260 - DvMF_2395 0.14 -1.6
3,027,362 + DvMF_2395 0.20 -0.8
3,027,625 - DvMF_2395 0.35 +0.3
3,027,665 - DvMF_2395 0.38 -0.4
3,027,684 - DvMF_2395 0.39 -1.2
3,027,688 - DvMF_2395 0.39 -1.0
3,027,788 + DvMF_2395 0.45 -2.4

Or see this region's nucleotide sequence