Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2153

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2152 and DvMF_2153 are separated by 57 nucleotidesDvMF_2153 and DvMF_2154 are separated by 365 nucleotides DvMF_2152: DvMF_2152 - thioesterase superfamily protein (RefSeq), at 2,681,821 to 2,682,255 _2152 DvMF_2153: DvMF_2153 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,682,313 to 2,684,127 _2153 DvMF_2154: DvMF_2154 - alanine dehydrogenase (RefSeq), at 2,684,493 to 2,685,608 _2154 Position (kb) 2682 2683 2684 2685Strain fitness (log2 ratio) -2 -1 0 1at 2681.326 kb on + strandat 2681.334 kb on - strandat 2681.349 kb on - strandat 2681.484 kb on + strandat 2681.492 kb on - strandat 2681.525 kb on - strandat 2681.654 kb on - strandat 2681.656 kb on + strandat 2682.029 kb on - strand, within DvMF_2152at 2682.265 kb on + strandat 2682.394 kb on - strandat 2682.892 kb on - strand, within DvMF_2153at 2682.942 kb on - strand, within DvMF_2153at 2683.085 kb on + strand, within DvMF_2153at 2683.129 kb on - strand, within DvMF_2153at 2683.381 kb on - strand, within DvMF_2153at 2683.674 kb on - strand, within DvMF_2153at 2683.701 kb on + strand, within DvMF_2153at 2683.718 kb on + strand, within DvMF_2153at 2683.875 kb on + strand, within DvMF_2153at 2684.719 kb on - strand, within DvMF_2154at 2684.986 kb on + strand, within DvMF_2154at 2685.108 kb on - strand, within DvMF_2154

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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2,681,326 + -0.4
2,681,334 - -2.3
2,681,349 - -1.9
2,681,484 + -1.3
2,681,492 - -0.7
2,681,525 - +0.3
2,681,654 - -0.4
2,681,656 + -0.4
2,682,029 - DvMF_2152 0.48 -0.9
2,682,265 + -1.5
2,682,394 - -0.2
2,682,892 - DvMF_2153 0.32 +0.6
2,682,942 - DvMF_2153 0.35 -1.1
2,683,085 + DvMF_2153 0.43 -1.0
2,683,129 - DvMF_2153 0.45 -0.4
2,683,381 - DvMF_2153 0.59 -0.8
2,683,674 - DvMF_2153 0.75 -0.5
2,683,701 + DvMF_2153 0.76 +0.1
2,683,718 + DvMF_2153 0.77 -0.4
2,683,875 + DvMF_2153 0.86 -0.8
2,684,719 - DvMF_2154 0.20 +0.4
2,684,986 + DvMF_2154 0.44 -2.1
2,685,108 - DvMF_2154 0.55 +0.1

Or see this region's nucleotide sequence