Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2126

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2125 and DvMF_2126 are separated by 2 nucleotidesDvMF_2126 and DvMF_2127 are separated by 279 nucleotides DvMF_2125: DvMF_2125 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,644,383 to 2,645,978 _2125 DvMF_2126: DvMF_2126 - Excinuclease ABC C subunit domain protein (RefSeq), at 2,645,981 to 2,646,298 _2126 DvMF_2127: DvMF_2127 - metallo-beta-lactamase family protein (RefSeq), at 2,646,578 to 2,647,318 _2127 Position (kb) 2645 2646 2647Strain fitness (log2 ratio) -3 -2 -1 0 1at 2646.025 kb on - strand, within DvMF_2126at 2646.238 kb on - strand, within DvMF_2126at 2646.617 kb on - strandat 2646.627 kb on - strandat 2646.778 kb on - strand, within DvMF_2127at 2647.089 kb on + strand, within DvMF_2127at 2647.091 kb on + strand, within DvMF_2127at 2647.135 kb on - strand, within DvMF_2127at 2647.158 kb on - strand, within DvMF_2127

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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2,646,025 - DvMF_2126 0.14 -0.3
2,646,238 - DvMF_2126 0.81 -0.3
2,646,617 - -3.3
2,646,627 - +0.1
2,646,778 - DvMF_2127 0.27 -0.2
2,647,089 + DvMF_2127 0.69 -3.0
2,647,091 + DvMF_2127 0.69 -1.5
2,647,135 - DvMF_2127 0.75 +0.4
2,647,158 - DvMF_2127 0.78 -0.5

Or see this region's nucleotide sequence