Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1971 and DvMF_1972 are separated by 99 nucleotides DvMF_1972 and DvMF_1973 overlap by 4 nucleotides DvMF_1973 and DvMF_1974 are separated by 24 nucleotides DvMF_1974 and DvMF_1975 are separated by 10 nucleotides
DvMF_1971: DvMF_1971 - CRISPR-associated helicase Cas3 (RefSeq), at 2,436,553 to 2,438,775
_1971
DvMF_1972: DvMF_1972 - CRISPR-associated protein Cas5 family (RefSeq), at 2,438,875 to 2,439,540
_1972
DvMF_1973: DvMF_1973 - CRISPR-associated protein, Csd1 family (RefSeq), at 2,439,537 to 2,441,426
_1973
DvMF_1974: DvMF_1974 - CRISPR-associated protein, Csd2 family (RefSeq), at 2,441,451 to 2,442,404
_1974
DvMF_1975: DvMF_1975 - CRISPR-associated protein Cas4 (RefSeq), at 2,442,415 to 2,443,182
_1975
Position (kb)
2439
2440
2441
2442 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2438.580 kb on - strand at 2438.617 kb on + strand at 2438.657 kb on - strand at 2438.704 kb on - strand at 2438.711 kb on - strand at 2438.725 kb on - strand at 2438.738 kb on + strand at 2438.832 kb on + strand at 2438.908 kb on + strand at 2438.934 kb on + strand at 2439.086 kb on - strand, within DvMF_1972 at 2439.188 kb on + strand, within DvMF_1972 at 2439.202 kb on + strand, within DvMF_1972 at 2439.360 kb on + strand, within DvMF_1972 at 2439.368 kb on - strand, within DvMF_1972 at 2439.529 kb on - strand at 2439.617 kb on - strand at 2439.782 kb on + strand, within DvMF_1973 at 2439.826 kb on - strand, within DvMF_1973 at 2440.095 kb on + strand, within DvMF_1973 at 2440.095 kb on + strand, within DvMF_1973 at 2440.125 kb on - strand, within DvMF_1973 at 2440.135 kb on - strand, within DvMF_1973 at 2440.355 kb on + strand, within DvMF_1973 at 2440.355 kb on + strand, within DvMF_1973 at 2440.355 kb on + strand, within DvMF_1973 at 2440.355 kb on + strand, within DvMF_1973 at 2440.785 kb on - strand, within DvMF_1973 at 2440.866 kb on + strand, within DvMF_1973 at 2440.884 kb on - strand, within DvMF_1973 at 2440.915 kb on + strand, within DvMF_1973 at 2441.054 kb on - strand, within DvMF_1973 at 2441.172 kb on + strand, within DvMF_1973 at 2441.175 kb on - strand, within DvMF_1973 at 2441.383 kb on + strand at 2441.454 kb on + strand at 2441.582 kb on - strand, within DvMF_1974 at 2441.630 kb on + strand, within DvMF_1974 at 2441.638 kb on - strand, within DvMF_1974 at 2441.712 kb on - strand, within DvMF_1974 at 2442.075 kb on + strand, within DvMF_1974 at 2442.078 kb on - strand, within DvMF_1974 at 2442.083 kb on - strand, within DvMF_1974 at 2442.142 kb on + strand, within DvMF_1974 at 2442.142 kb on + strand, within DvMF_1974 at 2442.150 kb on - strand, within DvMF_1974
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 2,438,580 - -0.3 2,438,617 + -1.1 2,438,657 - -1.9 2,438,704 - +0.1 2,438,711 - -2.4 2,438,725 - -1.1 2,438,738 + -0.9 2,438,832 + -0.8 2,438,908 + -1.2 2,438,934 + -0.6 2,439,086 - DvMF_1972 0.32 +0.6 2,439,188 + DvMF_1972 0.47 +0.2 2,439,202 + DvMF_1972 0.49 -0.7 2,439,360 + DvMF_1972 0.73 -1.5 2,439,368 - DvMF_1972 0.74 -1.8 2,439,529 - -3.3 2,439,617 - -1.2 2,439,782 + DvMF_1973 0.13 -1.7 2,439,826 - DvMF_1973 0.15 -1.8 2,440,095 + DvMF_1973 0.30 -2.0 2,440,095 + DvMF_1973 0.30 -1.3 2,440,125 - DvMF_1973 0.31 -4.0 2,440,135 - DvMF_1973 0.32 -0.8 2,440,355 + DvMF_1973 0.43 -2.8 2,440,355 + DvMF_1973 0.43 -0.4 2,440,355 + DvMF_1973 0.43 -0.8 2,440,355 + DvMF_1973 0.43 -4.0 2,440,785 - DvMF_1973 0.66 -1.8 2,440,866 + DvMF_1973 0.70 -0.9 2,440,884 - DvMF_1973 0.71 -1.6 2,440,915 + DvMF_1973 0.73 -0.7 2,441,054 - DvMF_1973 0.80 -0.7 2,441,172 + DvMF_1973 0.87 -1.0 2,441,175 - DvMF_1973 0.87 -2.0 2,441,383 + -0.3 2,441,454 + -1.1 2,441,582 - DvMF_1974 0.14 +0.1 2,441,630 + DvMF_1974 0.19 -0.1 2,441,638 - DvMF_1974 0.20 -1.1 2,441,712 - DvMF_1974 0.27 -0.4 2,442,075 + DvMF_1974 0.65 -0.3 2,442,078 - DvMF_1974 0.66 -3.2 2,442,083 - DvMF_1974 0.66 -2.3 2,442,142 + DvMF_1974 0.72 -1.0 2,442,142 + DvMF_1974 0.72 -0.1 2,442,150 - DvMF_1974 0.73 +0.1
Or see this region's nucleotide sequence