Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1973

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1971 and DvMF_1972 are separated by 99 nucleotidesDvMF_1972 and DvMF_1973 overlap by 4 nucleotidesDvMF_1973 and DvMF_1974 are separated by 24 nucleotidesDvMF_1974 and DvMF_1975 are separated by 10 nucleotides DvMF_1971: DvMF_1971 - CRISPR-associated helicase Cas3 (RefSeq), at 2,436,553 to 2,438,775 _1971 DvMF_1972: DvMF_1972 - CRISPR-associated protein Cas5 family (RefSeq), at 2,438,875 to 2,439,540 _1972 DvMF_1973: DvMF_1973 - CRISPR-associated protein, Csd1 family (RefSeq), at 2,439,537 to 2,441,426 _1973 DvMF_1974: DvMF_1974 - CRISPR-associated protein, Csd2 family (RefSeq), at 2,441,451 to 2,442,404 _1974 DvMF_1975: DvMF_1975 - CRISPR-associated protein Cas4 (RefSeq), at 2,442,415 to 2,443,182 _1975 Position (kb) 2439 2440 2441 2442Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2438.580 kb on - strandat 2438.617 kb on + strandat 2438.657 kb on - strandat 2438.704 kb on - strandat 2438.711 kb on - strandat 2438.725 kb on - strandat 2438.738 kb on + strandat 2438.832 kb on + strandat 2438.908 kb on + strandat 2438.934 kb on + strandat 2439.086 kb on - strand, within DvMF_1972at 2439.188 kb on + strand, within DvMF_1972at 2439.202 kb on + strand, within DvMF_1972at 2439.360 kb on + strand, within DvMF_1972at 2439.368 kb on - strand, within DvMF_1972at 2439.529 kb on - strandat 2439.617 kb on - strandat 2439.782 kb on + strand, within DvMF_1973at 2439.826 kb on - strand, within DvMF_1973at 2440.095 kb on + strand, within DvMF_1973at 2440.095 kb on + strand, within DvMF_1973at 2440.125 kb on - strand, within DvMF_1973at 2440.135 kb on - strand, within DvMF_1973at 2440.355 kb on + strand, within DvMF_1973at 2440.355 kb on + strand, within DvMF_1973at 2440.355 kb on + strand, within DvMF_1973at 2440.355 kb on + strand, within DvMF_1973at 2440.785 kb on - strand, within DvMF_1973at 2440.866 kb on + strand, within DvMF_1973at 2440.884 kb on - strand, within DvMF_1973at 2440.915 kb on + strand, within DvMF_1973at 2441.054 kb on - strand, within DvMF_1973at 2441.172 kb on + strand, within DvMF_1973at 2441.175 kb on - strand, within DvMF_1973at 2441.383 kb on + strandat 2441.454 kb on + strandat 2441.582 kb on - strand, within DvMF_1974at 2441.630 kb on + strand, within DvMF_1974at 2441.638 kb on - strand, within DvMF_1974at 2441.712 kb on - strand, within DvMF_1974at 2442.075 kb on + strand, within DvMF_1974at 2442.078 kb on - strand, within DvMF_1974at 2442.083 kb on - strand, within DvMF_1974at 2442.142 kb on + strand, within DvMF_1974at 2442.142 kb on + strand, within DvMF_1974at 2442.150 kb on - strand, within DvMF_1974

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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2,438,580 - -0.3
2,438,617 + -1.1
2,438,657 - -1.9
2,438,704 - +0.1
2,438,711 - -2.4
2,438,725 - -1.1
2,438,738 + -0.9
2,438,832 + -0.8
2,438,908 + -1.2
2,438,934 + -0.6
2,439,086 - DvMF_1972 0.32 +0.6
2,439,188 + DvMF_1972 0.47 +0.2
2,439,202 + DvMF_1972 0.49 -0.7
2,439,360 + DvMF_1972 0.73 -1.5
2,439,368 - DvMF_1972 0.74 -1.8
2,439,529 - -3.3
2,439,617 - -1.2
2,439,782 + DvMF_1973 0.13 -1.7
2,439,826 - DvMF_1973 0.15 -1.8
2,440,095 + DvMF_1973 0.30 -2.0
2,440,095 + DvMF_1973 0.30 -1.3
2,440,125 - DvMF_1973 0.31 -4.0
2,440,135 - DvMF_1973 0.32 -0.8
2,440,355 + DvMF_1973 0.43 -2.8
2,440,355 + DvMF_1973 0.43 -0.4
2,440,355 + DvMF_1973 0.43 -0.8
2,440,355 + DvMF_1973 0.43 -4.0
2,440,785 - DvMF_1973 0.66 -1.8
2,440,866 + DvMF_1973 0.70 -0.9
2,440,884 - DvMF_1973 0.71 -1.6
2,440,915 + DvMF_1973 0.73 -0.7
2,441,054 - DvMF_1973 0.80 -0.7
2,441,172 + DvMF_1973 0.87 -1.0
2,441,175 - DvMF_1973 0.87 -2.0
2,441,383 + -0.3
2,441,454 + -1.1
2,441,582 - DvMF_1974 0.14 +0.1
2,441,630 + DvMF_1974 0.19 -0.1
2,441,638 - DvMF_1974 0.20 -1.1
2,441,712 - DvMF_1974 0.27 -0.4
2,442,075 + DvMF_1974 0.65 -0.3
2,442,078 - DvMF_1974 0.66 -3.2
2,442,083 - DvMF_1974 0.66 -2.3
2,442,142 + DvMF_1974 0.72 -1.0
2,442,142 + DvMF_1974 0.72 -0.1
2,442,150 - DvMF_1974 0.73 +0.1

Or see this region's nucleotide sequence