Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1923

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1922 and DvMF_1923 overlap by 1 nucleotidesDvMF_1923 and DvMF_1924 are separated by 153 nucleotides DvMF_1922: DvMF_1922 - hypothetical protein (RefSeq), at 2,368,549 to 2,371,248 _1922 DvMF_1923: DvMF_1923 - glycosyl transferase family 2 (RefSeq), at 2,371,248 to 2,372,399 _1923 DvMF_1924: DvMF_1924 - ABC transporter related (RefSeq), at 2,372,553 to 2,373,755 _1924 Position (kb) 2371 2372 2373Strain fitness (log2 ratio) -3 -2 -1 0 1at 2370.325 kb on + strand, within DvMF_1922at 2370.398 kb on + strand, within DvMF_1922at 2370.476 kb on + strand, within DvMF_1922at 2370.730 kb on + strand, within DvMF_1922at 2370.730 kb on + strand, within DvMF_1922at 2370.771 kb on - strand, within DvMF_1922at 2370.855 kb on - strand, within DvMF_1922at 2370.954 kb on - strand, within DvMF_1922at 2371.108 kb on - strandat 2371.108 kb on - strandat 2371.141 kb on - strandat 2371.212 kb on + strandat 2371.393 kb on + strand, within DvMF_1923at 2372.116 kb on - strand, within DvMF_1923at 2372.333 kb on + strandat 2372.341 kb on - strandat 2372.603 kb on + strandat 2373.120 kb on - strand, within DvMF_1924at 2373.306 kb on + strand, within DvMF_1924

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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2,370,325 + DvMF_1922 0.66 -0.8
2,370,398 + DvMF_1922 0.68 +0.9
2,370,476 + DvMF_1922 0.71 +0.2
2,370,730 + DvMF_1922 0.81 -0.6
2,370,730 + DvMF_1922 0.81 -1.6
2,370,771 - DvMF_1922 0.82 -0.1
2,370,855 - DvMF_1922 0.85 -1.8
2,370,954 - DvMF_1922 0.89 -0.7
2,371,108 - -0.4
2,371,108 - -1.0
2,371,141 - -0.3
2,371,212 + +0.3
2,371,393 + DvMF_1923 0.13 -3.5
2,372,116 - DvMF_1923 0.75 -1.0
2,372,333 + -0.8
2,372,341 - -2.2
2,372,603 + -0.9
2,373,120 - DvMF_1924 0.47 -1.2
2,373,306 + DvMF_1924 0.63 -2.7

Or see this region's nucleotide sequence