Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1830

Experiment: 14 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1829 and DvMF_1830 are separated by 346 nucleotidesDvMF_1830 and DvMF_1831 are separated by 484 nucleotides DvMF_1829: DvMF_1829 - extracellular solute-binding protein family 5 (RefSeq), at 2,231,969 to 2,233,531 _1829 DvMF_1830: DvMF_1830 - hypothetical protein (RefSeq), at 2,233,878 to 2,234,846 _1830 DvMF_1831: DvMF_1831 - transcriptional regulator, MarR family (RefSeq), at 2,235,331 to 2,235,993 _1831 Position (kb) 2233 2234 2235Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2232.973 kb on - strand, within DvMF_1829at 2233.200 kb on + strand, within DvMF_1829at 2233.251 kb on + strand, within DvMF_1829at 2233.414 kb on + strandat 2233.446 kb on + strandat 2233.653 kb on - strandat 2233.742 kb on - strandat 2233.790 kb on + strandat 2233.792 kb on + strandat 2234.130 kb on + strand, within DvMF_1830at 2234.180 kb on - strand, within DvMF_1830at 2234.325 kb on - strand, within DvMF_1830at 2234.667 kb on - strand, within DvMF_1830at 2234.670 kb on + strand, within DvMF_1830at 2234.681 kb on + strand, within DvMF_1830at 2234.706 kb on - strand, within DvMF_1830at 2234.760 kb on - strandat 2234.882 kb on + strandat 2234.926 kb on + strandat 2234.974 kb on - strandat 2234.979 kb on - strandat 2235.165 kb on - strandat 2235.172 kb on + strandat 2235.349 kb on + strandat 2235.357 kb on - strandat 2235.357 kb on - strandat 2235.599 kb on - strand, within DvMF_1831at 2235.687 kb on + strand, within DvMF_1831at 2235.725 kb on - strand, within DvMF_1831at 2235.843 kb on + strand, within DvMF_1831at 2235.846 kb on - strand, within DvMF_1831

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
remove
2,232,973 - DvMF_1829 0.64 -0.8
2,233,200 + DvMF_1829 0.79 -0.3
2,233,251 + DvMF_1829 0.82 -2.3
2,233,414 + -2.6
2,233,446 + -1.7
2,233,653 - -0.7
2,233,742 - -0.6
2,233,790 + +0.1
2,233,792 + -1.7
2,234,130 + DvMF_1830 0.26 -1.0
2,234,180 - DvMF_1830 0.31 -2.7
2,234,325 - DvMF_1830 0.46 -3.3
2,234,667 - DvMF_1830 0.81 -1.4
2,234,670 + DvMF_1830 0.82 -0.9
2,234,681 + DvMF_1830 0.83 -3.0
2,234,706 - DvMF_1830 0.85 +0.2
2,234,760 - -1.3
2,234,882 + -0.2
2,234,926 + -0.1
2,234,974 - -0.3
2,234,979 - -1.1
2,235,165 - +1.9
2,235,172 + -0.9
2,235,349 + -0.4
2,235,357 - +1.3
2,235,357 - +1.7
2,235,599 - DvMF_1831 0.40 -2.7
2,235,687 + DvMF_1831 0.54 -3.9
2,235,725 - DvMF_1831 0.59 -0.7
2,235,843 + DvMF_1831 0.77 -0.1
2,235,846 - DvMF_1831 0.78 -0.2

Or see this region's nucleotide sequence