Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1825 and DvMF_1826 are separated by 13 nucleotides DvMF_1826 and DvMF_1827 are separated by 3 nucleotides DvMF_1827 and DvMF_1828 are separated by 1 nucleotides
DvMF_1825: DvMF_1825 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,227,464 to 2,228,483
_1825
DvMF_1826: DvMF_1826 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,228,497 to 2,229,498
_1826
DvMF_1827: DvMF_1827 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,229,502 to 2,230,422
_1827
DvMF_1828: DvMF_1828 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,230,424 to 2,231,401
_1828
Position (kb)
2228
2229
2230 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2227.525 kb on + strand at 2227.804 kb on - strand, within DvMF_1825 at 2227.931 kb on - strand, within DvMF_1825 at 2228.068 kb on + strand, within DvMF_1825 at 2228.111 kb on + strand, within DvMF_1825 at 2228.250 kb on - strand, within DvMF_1825 at 2228.280 kb on - strand, within DvMF_1825 at 2228.864 kb on - strand, within DvMF_1826 at 2228.891 kb on + strand, within DvMF_1826 at 2228.994 kb on - strand, within DvMF_1826 at 2229.176 kb on - strand, within DvMF_1826 at 2229.273 kb on + strand, within DvMF_1826 at 2229.385 kb on + strand, within DvMF_1826 at 2229.406 kb on - strand at 2229.665 kb on + strand, within DvMF_1827 at 2229.761 kb on - strand, within DvMF_1827 at 2229.962 kb on - strand, within DvMF_1827 at 2230.161 kb on - strand, within DvMF_1827 at 2230.328 kb on + strand, within DvMF_1827 at 2230.472 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 2,227,525 + -2.3 2,227,804 - DvMF_1825 0.33 -2.0 2,227,931 - DvMF_1825 0.46 -1.7 2,228,068 + DvMF_1825 0.59 -4.0 2,228,111 + DvMF_1825 0.63 -1.7 2,228,250 - DvMF_1825 0.77 -3.4 2,228,280 - DvMF_1825 0.80 -2.0 2,228,864 - DvMF_1826 0.37 -3.3 2,228,891 + DvMF_1826 0.39 -2.5 2,228,994 - DvMF_1826 0.50 -2.9 2,229,176 - DvMF_1826 0.68 -2.6 2,229,273 + DvMF_1826 0.77 -1.4 2,229,385 + DvMF_1826 0.89 -4.9 2,229,406 - -0.6 2,229,665 + DvMF_1827 0.18 +1.0 2,229,761 - DvMF_1827 0.28 -2.9 2,229,962 - DvMF_1827 0.50 -3.3 2,230,161 - DvMF_1827 0.72 -1.7 2,230,328 + DvMF_1827 0.90 -1.0 2,230,472 - -1.4
Or see this region's nucleotide sequence