Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1730 and DvMF_1731 are separated by 330 nucleotides DvMF_1731 and DvMF_1732 overlap by 4 nucleotides DvMF_1732 and DvMF_1733 are separated by 11 nucleotides
DvMF_1730: DvMF_1730 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,114,641 to 2,116,164
_1730
DvMF_1731: DvMF_1731 - cytochrome c class III (RefSeq), at 2,116,495 to 2,116,899
_1731
DvMF_1732: DvMF_1732 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 2,116,896 to 2,117,864
_1732
DvMF_1733: DvMF_1733 - nickel-dependent hydrogenase large subunit (RefSeq), at 2,117,876 to 2,119,525
_1733
Position (kb)
2116
2117 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2115.504 kb on + strand, within DvMF_1730 at 2115.681 kb on - strand, within DvMF_1730 at 2115.766 kb on - strand, within DvMF_1730 at 2115.766 kb on - strand, within DvMF_1730 at 2115.922 kb on - strand, within DvMF_1730 at 2116.113 kb on + strand at 2116.701 kb on - strand, within DvMF_1731 at 2116.711 kb on - strand, within DvMF_1731 at 2116.725 kb on - strand, within DvMF_1731 at 2117.132 kb on - strand, within DvMF_1732 at 2117.351 kb on + strand, within DvMF_1732 at 2117.534 kb on + strand, within DvMF_1732 at 2117.577 kb on - strand, within DvMF_1732 at 2117.577 kb on - strand, within DvMF_1732 at 2117.585 kb on + strand, within DvMF_1732 at 2117.701 kb on + strand, within DvMF_1732 at 2117.709 kb on - strand, within DvMF_1732 at 2117.723 kb on + strand, within DvMF_1732 at 2117.778 kb on + strand at 2117.817 kb on - strand at 2117.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 2,115,504 + DvMF_1730 0.57 -0.4 2,115,681 - DvMF_1730 0.68 -0.6 2,115,766 - DvMF_1730 0.74 -1.6 2,115,766 - DvMF_1730 0.74 +0.2 2,115,922 - DvMF_1730 0.84 -0.3 2,116,113 + -1.1 2,116,701 - DvMF_1731 0.51 -1.0 2,116,711 - DvMF_1731 0.53 -1.7 2,116,725 - DvMF_1731 0.57 -1.5 2,117,132 - DvMF_1732 0.24 -2.8 2,117,351 + DvMF_1732 0.47 -3.0 2,117,534 + DvMF_1732 0.66 -0.9 2,117,577 - DvMF_1732 0.70 -3.9 2,117,577 - DvMF_1732 0.70 -0.8 2,117,585 + DvMF_1732 0.71 -0.4 2,117,701 + DvMF_1732 0.83 -1.0 2,117,709 - DvMF_1732 0.84 -0.4 2,117,723 + DvMF_1732 0.85 +0.2 2,117,778 + -1.1 2,117,817 - -0.4 2,117,823 - -1.7
Or see this region's nucleotide sequence