Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1726 and DvMF_1727 are separated by 172 nucleotides DvMF_1727 and DvMF_1728 overlap by 4 nucleotides DvMF_1728 and DvMF_1729 are separated by 329 nucleotides
DvMF_1726: DvMF_1726 - hypothetical protein (RefSeq), at 2,109,654 to 2,109,977
_1726
DvMF_1727: DvMF_1727 - hypothetical protein (RefSeq), at 2,110,150 to 2,110,947
_1727
DvMF_1728: DvMF_1728 - ABC transporter related (RefSeq), at 2,110,944 to 2,111,777
_1728
DvMF_1729: DvMF_1729 - DNA mismatch repair protein MutL (RefSeq), at 2,112,107 to 2,114,398
_1729
Position (kb)
2110
2111
2112 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2110.212 kb on + strand at 2110.235 kb on - strand, within DvMF_1727 at 2110.580 kb on - strand, within DvMF_1727 at 2110.606 kb on + strand, within DvMF_1727 at 2110.655 kb on - strand, within DvMF_1727 at 2110.778 kb on - strand, within DvMF_1727 at 2110.792 kb on - strand, within DvMF_1727 at 2110.794 kb on + strand, within DvMF_1727 at 2111.095 kb on - strand, within DvMF_1728 at 2111.122 kb on + strand, within DvMF_1728 at 2111.175 kb on + strand, within DvMF_1728 at 2111.272 kb on - strand, within DvMF_1728 at 2111.539 kb on + strand, within DvMF_1728 at 2111.681 kb on + strand, within DvMF_1728 at 2111.865 kb on + strand at 2111.905 kb on - strand at 2111.920 kb on + strand at 2112.001 kb on - strand at 2112.192 kb on - strand at 2112.752 kb on + strand, within DvMF_1729 at 2112.760 kb on - strand, within DvMF_1729
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 2,110,212 + -1.0 2,110,235 - DvMF_1727 0.11 +0.3 2,110,580 - DvMF_1727 0.54 -2.1 2,110,606 + DvMF_1727 0.57 +1.7 2,110,655 - DvMF_1727 0.63 +0.7 2,110,778 - DvMF_1727 0.79 +0.0 2,110,792 - DvMF_1727 0.80 -0.1 2,110,794 + DvMF_1727 0.81 -3.5 2,111,095 - DvMF_1728 0.18 -1.0 2,111,122 + DvMF_1728 0.21 -0.9 2,111,175 + DvMF_1728 0.28 -1.5 2,111,272 - DvMF_1728 0.39 -0.1 2,111,539 + DvMF_1728 0.71 -0.8 2,111,681 + DvMF_1728 0.88 +2.0 2,111,865 + -1.0 2,111,905 - +2.8 2,111,920 + +1.1 2,112,001 - -0.9 2,112,192 - -0.6 2,112,752 + DvMF_1729 0.28 -0.8 2,112,760 - DvMF_1729 0.28 -1.8
Or see this region's nucleotide sequence