Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1725 and DvMF_1726 are separated by 369 nucleotides DvMF_1726 and DvMF_1727 are separated by 172 nucleotides DvMF_1727 and DvMF_1728 overlap by 4 nucleotides
DvMF_1725: DvMF_1725 - protein of unknown function UPF0150 (RefSeq), at 2,108,877 to 2,109,284
_1725
DvMF_1726: DvMF_1726 - hypothetical protein (RefSeq), at 2,109,654 to 2,109,977
_1726
DvMF_1727: DvMF_1727 - hypothetical protein (RefSeq), at 2,110,150 to 2,110,947
_1727
DvMF_1728: DvMF_1728 - ABC transporter related (RefSeq), at 2,110,944 to 2,111,777
_1728
Position (kb)
2110
2111 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2109.390 kb on - strand at 2109.571 kb on + strand at 2109.571 kb on + strand at 2109.721 kb on + strand, within DvMF_1726 at 2109.891 kb on + strand, within DvMF_1726 at 2110.212 kb on + strand at 2110.235 kb on - strand, within DvMF_1727 at 2110.580 kb on - strand, within DvMF_1727 at 2110.606 kb on + strand, within DvMF_1727 at 2110.655 kb on - strand, within DvMF_1727 at 2110.778 kb on - strand, within DvMF_1727 at 2110.792 kb on - strand, within DvMF_1727 at 2110.794 kb on + strand, within DvMF_1727 at 2111.095 kb on - strand, within DvMF_1728 at 2111.122 kb on + strand, within DvMF_1728 at 2111.175 kb on + strand, within DvMF_1728 at 2111.272 kb on - strand, within DvMF_1728 at 2111.539 kb on + strand, within DvMF_1728 at 2111.681 kb on + strand, within DvMF_1728 at 2111.865 kb on + strand at 2111.905 kb on - strand at 2111.920 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 2,109,390 - -0.7 2,109,571 + -0.1 2,109,571 + -1.2 2,109,721 + DvMF_1726 0.21 -1.1 2,109,891 + DvMF_1726 0.73 -1.3 2,110,212 + -1.0 2,110,235 - DvMF_1727 0.11 +0.3 2,110,580 - DvMF_1727 0.54 -2.1 2,110,606 + DvMF_1727 0.57 +1.7 2,110,655 - DvMF_1727 0.63 +0.7 2,110,778 - DvMF_1727 0.79 +0.0 2,110,792 - DvMF_1727 0.80 -0.1 2,110,794 + DvMF_1727 0.81 -3.5 2,111,095 - DvMF_1728 0.18 -1.0 2,111,122 + DvMF_1728 0.21 -0.9 2,111,175 + DvMF_1728 0.28 -1.5 2,111,272 - DvMF_1728 0.39 -0.1 2,111,539 + DvMF_1728 0.71 -0.8 2,111,681 + DvMF_1728 0.88 +2.0 2,111,865 + -1.0 2,111,905 - +2.8 2,111,920 + +1.1
Or see this region's nucleotide sequence