Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1585

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1583 and DvMF_1584 overlap by 8 nucleotidesDvMF_1584 and DvMF_1585 are separated by 39 nucleotidesDvMF_1585 and DvMF_1586 are separated by 374 nucleotides DvMF_1583: DvMF_1583 - ABC transporter related (RefSeq), at 1,952,261 to 1,952,983 _1583 DvMF_1584: DvMF_1584 - ABC transporter related (RefSeq), at 1,952,976 to 1,953,680 _1584 DvMF_1585: DvMF_1585 - CBS domain containing protein (RefSeq), at 1,953,720 to 1,954,373 _1585 DvMF_1586: DvMF_1586 - extracellular solute-binding protein family 1 (RefSeq), at 1,954,748 to 1,955,749 _1586 Position (kb) 1953 1954 1955Strain fitness (log2 ratio) -3 -2 -1 0 1at 1952.803 kb on - strand, within DvMF_1583at 1952.919 kb on - strandat 1952.952 kb on + strandat 1953.141 kb on + strand, within DvMF_1584at 1953.150 kb on - strand, within DvMF_1584at 1953.190 kb on + strand, within DvMF_1584at 1953.263 kb on - strand, within DvMF_1584at 1953.324 kb on - strand, within DvMF_1584at 1953.351 kb on + strand, within DvMF_1584at 1953.532 kb on - strand, within DvMF_1584at 1953.649 kb on - strandat 1953.723 kb on - strandat 1953.757 kb on - strandat 1953.935 kb on + strand, within DvMF_1585at 1954.248 kb on - strand, within DvMF_1585at 1954.476 kb on - strandat 1954.595 kb on + strandat 1954.663 kb on + strandat 1954.697 kb on + strandat 1954.732 kb on + strandat 1954.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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1,952,803 - DvMF_1583 0.75 +0.1
1,952,919 - -1.0
1,952,952 + -1.5
1,953,141 + DvMF_1584 0.23 -1.1
1,953,150 - DvMF_1584 0.25 -3.7
1,953,190 + DvMF_1584 0.30 -0.7
1,953,263 - DvMF_1584 0.41 -1.0
1,953,324 - DvMF_1584 0.49 -0.2
1,953,351 + DvMF_1584 0.53 -1.0
1,953,532 - DvMF_1584 0.79 -0.1
1,953,649 - -2.1
1,953,723 - -1.6
1,953,757 - -2.6
1,953,935 + DvMF_1585 0.33 -1.2
1,954,248 - DvMF_1585 0.81 -3.2
1,954,476 - +0.9
1,954,595 + -2.5
1,954,663 + -0.5
1,954,697 + -0.9
1,954,732 + -0.4
1,954,822 - -1.9

Or see this region's nucleotide sequence