Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1576

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1575 and DvMF_1576 are separated by 795 nucleotidesDvMF_1576 and DvMF_1577 are separated by 170 nucleotidesDvMF_1577 and DvMF_R0045 are separated by 200 nucleotidesDvMF_R0045 and DvMF_R0046 are separated by 99 nucleotidesDvMF_R0046 and DvMF_R0047 are separated by 6 nucleotides DvMF_1575: DvMF_1575 - sulfate transporter (RefSeq), at 1,941,786 to 1,943,498 _1575 DvMF_1576: DvMF_1576 - transcriptional regulator, AraC family (RefSeq), at 1,944,294 to 1,945,604 _1576 DvMF_1577: DvMF_1577 - hypothetical protein (RefSeq), at 1,945,775 to 1,946,011 _1577 DvMF_R0045: DvMF_R0045 - tRNA-Asp (RefSeq), at 1,946,212 to 1,946,288 _R0045 DvMF_R0046: DvMF_R0046 - tRNA-Asp (RefSeq), at 1,946,388 to 1,946,464 _R0046 DvMF_R0047: DvMF_R0047 - tRNA-Val (RefSeq), at 1,946,471 to 1,946,546 _R0047 Position (kb) 1944 1945 1946Strain fitness (log2 ratio) -3 -2 -1 0 1at 1943.374 kb on + strandat 1943.488 kb on + strandat 1943.496 kb on - strandat 1943.717 kb on - strandat 1943.719 kb on - strandat 1943.780 kb on + strandat 1943.942 kb on - strandat 1943.972 kb on + strandat 1944.261 kb on + strandat 1944.351 kb on + strandat 1944.361 kb on + strandat 1944.371 kb on + strandat 1944.549 kb on - strand, within DvMF_1576at 1944.719 kb on - strand, within DvMF_1576at 1944.806 kb on - strand, within DvMF_1576at 1944.870 kb on - strand, within DvMF_1576at 1944.939 kb on - strand, within DvMF_1576at 1945.187 kb on + strand, within DvMF_1576at 1945.638 kb on + strandat 1945.705 kb on - strandat 1945.768 kb on + strandat 1945.771 kb on - strandat 1945.894 kb on + strand, within DvMF_1577at 1945.967 kb on + strand, within DvMF_1577at 1946.070 kb on + strandat 1946.073 kb on - strandat 1946.075 kb on + strandat 1946.075 kb on + strandat 1946.083 kb on - strandat 1946.083 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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1,943,374 + -1.0
1,943,488 + -0.8
1,943,496 - -0.7
1,943,717 - +0.4
1,943,719 - -2.1
1,943,780 + -0.5
1,943,942 - -1.3
1,943,972 + -1.6
1,944,261 + -1.7
1,944,351 + -0.7
1,944,361 + -0.2
1,944,371 + -1.9
1,944,549 - DvMF_1576 0.19 +1.0
1,944,719 - DvMF_1576 0.32 +0.1
1,944,806 - DvMF_1576 0.39 -2.5
1,944,870 - DvMF_1576 0.44 -2.9
1,944,939 - DvMF_1576 0.49 -0.4
1,945,187 + DvMF_1576 0.68 -0.5
1,945,638 + -0.9
1,945,705 - -0.7
1,945,768 + -2.3
1,945,771 - -0.4
1,945,894 + DvMF_1577 0.50 +0.1
1,945,967 + DvMF_1577 0.81 -1.7
1,946,070 + -0.5
1,946,073 - -0.2
1,946,075 + +0.1
1,946,075 + -0.7
1,946,083 - +0.8
1,946,083 - -0.8

Or see this region's nucleotide sequence