Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1493

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1492 and DvMF_1493 overlap by 1 nucleotidesDvMF_1493 and DvMF_1494 are separated by 736 nucleotides DvMF_1492: DvMF_1492 - multi-sensor hybrid histidine kinase (RefSeq), at 1,830,504 to 1,833,593 _1492 DvMF_1493: DvMF_1493 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,833,593 to 1,835,533 _1493 DvMF_1494: DvMF_1494 - type I secretion outer membrane protein, TolC family (RefSeq), at 1,836,270 to 1,837,622 _1494 Position (kb) 1833 1834 1835 1836Strain fitness (log2 ratio) -3 -2 -1 0 1at 1833.094 kb on - strand, within DvMF_1492at 1833.263 kb on - strand, within DvMF_1492at 1833.319 kb on - strandat 1833.326 kb on - strandat 1833.330 kb on - strandat 1833.451 kb on + strandat 1833.682 kb on - strandat 1833.741 kb on + strandat 1833.749 kb on - strandat 1833.789 kb on - strand, within DvMF_1493at 1833.876 kb on + strand, within DvMF_1493at 1834.000 kb on + strand, within DvMF_1493at 1834.093 kb on + strand, within DvMF_1493at 1834.265 kb on + strand, within DvMF_1493at 1834.265 kb on + strand, within DvMF_1493at 1834.273 kb on - strand, within DvMF_1493at 1834.331 kb on + strand, within DvMF_1493at 1834.339 kb on - strand, within DvMF_1493at 1834.349 kb on - strand, within DvMF_1493at 1834.449 kb on + strand, within DvMF_1493at 1834.490 kb on + strand, within DvMF_1493at 1834.496 kb on - strand, within DvMF_1493at 1834.597 kb on + strand, within DvMF_1493at 1834.597 kb on + strand, within DvMF_1493at 1834.887 kb on - strand, within DvMF_1493at 1834.930 kb on - strand, within DvMF_1493at 1835.100 kb on - strand, within DvMF_1493at 1835.196 kb on + strand, within DvMF_1493at 1835.196 kb on + strand, within DvMF_1493at 1835.333 kb on + strand, within DvMF_1493at 1835.352 kb on - strandat 1836.257 kb on + strandat 1836.327 kb on + strandat 1836.416 kb on + strand, within DvMF_1494at 1836.490 kb on + strand, within DvMF_1494at 1836.498 kb on - strand, within DvMF_1494at 1836.498 kb on - strand, within DvMF_1494at 1836.498 kb on - strand, within DvMF_1494at 1836.532 kb on - strand, within DvMF_1494

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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1,833,094 - DvMF_1492 0.84 -0.2
1,833,263 - DvMF_1492 0.89 -2.5
1,833,319 - -1.2
1,833,326 - -1.7
1,833,330 - -0.8
1,833,451 + -0.2
1,833,682 - -0.9
1,833,741 + -1.4
1,833,749 - +0.6
1,833,789 - DvMF_1493 0.10 -2.5
1,833,876 + DvMF_1493 0.15 -2.2
1,834,000 + DvMF_1493 0.21 -1.6
1,834,093 + DvMF_1493 0.26 -0.7
1,834,265 + DvMF_1493 0.35 +0.3
1,834,265 + DvMF_1493 0.35 -0.7
1,834,273 - DvMF_1493 0.35 -2.9
1,834,331 + DvMF_1493 0.38 -0.5
1,834,339 - DvMF_1493 0.38 -0.4
1,834,349 - DvMF_1493 0.39 -1.7
1,834,449 + DvMF_1493 0.44 +0.2
1,834,490 + DvMF_1493 0.46 -1.1
1,834,496 - DvMF_1493 0.47 -1.0
1,834,597 + DvMF_1493 0.52 -0.7
1,834,597 + DvMF_1493 0.52 -0.2
1,834,887 - DvMF_1493 0.67 -0.8
1,834,930 - DvMF_1493 0.69 -0.8
1,835,100 - DvMF_1493 0.78 -1.2
1,835,196 + DvMF_1493 0.83 -1.2
1,835,196 + DvMF_1493 0.83 -0.2
1,835,333 + DvMF_1493 0.90 -0.3
1,835,352 - +0.3
1,836,257 + -2.3
1,836,327 + -1.6
1,836,416 + DvMF_1494 0.11 -0.8
1,836,490 + DvMF_1494 0.16 -0.9
1,836,498 - DvMF_1494 0.17 -0.7
1,836,498 - DvMF_1494 0.17 -1.2
1,836,498 - DvMF_1494 0.17 -2.8
1,836,532 - DvMF_1494 0.19 -1.3

Or see this region's nucleotide sequence