Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1476

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1475 and DvMF_1476 are separated by 353 nucleotidesDvMF_1476 and DvMF_1477 overlap by 14 nucleotides DvMF_1475: DvMF_1475 - hypothetical protein (RefSeq), at 1,808,491 to 1,808,943 _1475 DvMF_1476: DvMF_1476 - protein of unknown function DUF486 (RefSeq), at 1,809,297 to 1,809,656 _1476 DvMF_1477: DvMF_1477 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 1,809,643 to 1,811,835 _1477 Position (kb) 1809 1810Strain fitness (log2 ratio) -3 -2 -1 0 1at 1808.384 kb on + strandat 1808.392 kb on - strandat 1808.446 kb on - strandat 1808.971 kb on - strandat 1808.983 kb on - strandat 1809.460 kb on + strand, within DvMF_1476at 1809.699 kb on + strandat 1809.810 kb on + strandat 1809.830 kb on - strandat 1809.830 kb on - strandat 1809.904 kb on - strand, within DvMF_1477at 1810.122 kb on - strand, within DvMF_1477at 1810.327 kb on + strand, within DvMF_1477

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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1,808,384 + -1.5
1,808,392 - -0.9
1,808,446 - -3.7
1,808,971 - -0.4
1,808,983 - -1.1
1,809,460 + DvMF_1476 0.45 -2.5
1,809,699 + +0.2
1,809,810 + +1.2
1,809,830 - -1.1
1,809,830 - -1.0
1,809,904 - DvMF_1477 0.12 -1.7
1,810,122 - DvMF_1477 0.22 -0.7
1,810,327 + DvMF_1477 0.31 +0.0

Or see this region's nucleotide sequence