Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1439 and DvMF_1440 are separated by 11 nucleotides DvMF_1440 and DvMF_1441 are separated by 124 nucleotides
DvMF_1439: DvMF_1439 - putative phytochrome sensor protein (RefSeq), at 1,761,165 to 1,761,728
_1439
DvMF_1440: DvMF_1440 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,761,740 to 1,762,756
_1440
DvMF_1441: DvMF_1441 - hemolysin A (RefSeq), at 1,762,881 to 1,763,711
_1441
Position (kb)
1761
1762
1763 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1760.750 kb on + strand at 1760.893 kb on - strand at 1761.149 kb on + strand at 1761.293 kb on + strand, within DvMF_1439 at 1761.301 kb on - strand, within DvMF_1439 at 1761.341 kb on - strand, within DvMF_1439 at 1761.420 kb on + strand, within DvMF_1439 at 1761.522 kb on - strand, within DvMF_1439 at 1761.707 kb on - strand at 1761.723 kb on + strand at 1761.723 kb on + strand at 1761.801 kb on - strand at 1761.811 kb on - strand at 1761.817 kb on + strand at 1761.850 kb on + strand, within DvMF_1440 at 1761.970 kb on - strand, within DvMF_1440 at 1762.063 kb on - strand, within DvMF_1440 at 1762.248 kb on - strand, within DvMF_1440 at 1762.258 kb on + strand, within DvMF_1440 at 1762.258 kb on + strand, within DvMF_1440 at 1762.266 kb on - strand, within DvMF_1440 at 1762.336 kb on - strand, within DvMF_1440 at 1762.428 kb on - strand, within DvMF_1440 at 1762.594 kb on + strand, within DvMF_1440 at 1762.869 kb on + strand at 1762.961 kb on - strand at 1763.293 kb on + strand, within DvMF_1441 at 1763.293 kb on + strand, within DvMF_1441 at 1763.301 kb on - strand, within DvMF_1441 at 1763.313 kb on + strand, within DvMF_1441 at 1763.572 kb on + strand, within DvMF_1441 at 1763.707 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 1,760,750 + +0.2 1,760,893 - -0.7 1,761,149 + -0.2 1,761,293 + DvMF_1439 0.23 -0.5 1,761,301 - DvMF_1439 0.24 -2.5 1,761,341 - DvMF_1439 0.31 -0.4 1,761,420 + DvMF_1439 0.45 +0.4 1,761,522 - DvMF_1439 0.63 +0.0 1,761,707 - +0.0 1,761,723 + -3.7 1,761,723 + -3.0 1,761,801 - +1.1 1,761,811 - -2.8 1,761,817 + -2.8 1,761,850 + DvMF_1440 0.11 -3.1 1,761,970 - DvMF_1440 0.23 -2.4 1,762,063 - DvMF_1440 0.32 -1.8 1,762,248 - DvMF_1440 0.50 -3.7 1,762,258 + DvMF_1440 0.51 -2.7 1,762,258 + DvMF_1440 0.51 -3.0 1,762,266 - DvMF_1440 0.52 +2.1 1,762,336 - DvMF_1440 0.59 -2.3 1,762,428 - DvMF_1440 0.68 -1.9 1,762,594 + DvMF_1440 0.84 -2.6 1,762,869 + -1.4 1,762,961 - -0.2 1,763,293 + DvMF_1441 0.50 -1.6 1,763,293 + DvMF_1441 0.50 -1.3 1,763,301 - DvMF_1441 0.51 +1.6 1,763,313 + DvMF_1441 0.52 -0.8 1,763,572 + DvMF_1441 0.83 -0.6 1,763,707 - +0.4
Or see this region's nucleotide sequence